Cow genome map

Conread name: rsin05_m18.y1

Conread position: 1-278
Cow position: chr2:194583-194856 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 32

Conread position: 1-290
Cow position: chr2:5868182-5868478 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 0

Conread position: 1-309
Cow position: chr2:12478136-12478453 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 168

Conread position: 1-309
Cow position: chr2:25744579-25744267 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 151

Conread position: 1-311
Cow position: chr2:169055-169368 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 97

Conread position: 1-311
Cow position: chr2:779296-779611 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 33

Conread position: 1-311
Cow position: chr2:4932065-4932379 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 233

Conread position: 1-311
Cow position: chr2:6004709-6005029 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 1-311
Cow position: chr2:9187938-9188244 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 208

Conread position: 1-311
Cow position: chr2:10467723-10467408 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 143

Conread position: 1-311
Cow position: chr2:11685128-11684830 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 1-311
Cow position: chr2:16321054-16320744 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 278, 34

Conread position: 1-311
Cow position: chr2:21982633-21982946 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 32

Conread position: 1-311
Cow position: chr2:22080036-22079717 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 1-311
Cow position: chr2:24470509-24470828 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 245

Conread position: 1-311
Cow position: chr2:24687803-24687491 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 49

Conread position: 1-311
Cow position: chr2:25886430-25886744 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 199

Conread position: 1-311
Cow position: chr2:29217845-29217526 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 71

Conread position: 1-311
Cow position: chr2:29968110-29967790 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr2:32063924-32064241 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 1-311
Cow position: chr2:36982777-36982460 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 1-311
Cow position: chr2:39676637-39676954 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 250

Conread position: 1-311
Cow position: chr2:42668582-42668895 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 45

Conread position: 1-311
Cow position: chr2:44057908-44058218 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 74

Conread position: 1-311
Cow position: chr2:44477735-44477418 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 0

Conread position: 1-311
Cow position: chr2:44932897-44933212 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 0

Conread position: 1-311
Cow position: chr2:45212560-45212880 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr2:47183002-47183322 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 0

Conread position: 1-311
Cow position: chr2:50981026-50981340 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 197

Conread position: 1-311
Cow position: chr2:53331928-53331608 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr2:62730650-62730330 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr2:72931956-72932280 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 1-311
Cow position: chr2:78764780-78764465 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 169

Conread position: 1-311
Cow position: chr2:80290638-80290958 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-312
Cow position: chr2:245770-246088 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 0

Conread position: 1-384
Cow position: chr2:34490566-34490175 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 164

Conread position: 1-384
Cow position: chr2:36075703-36076099 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 52

Conread position: 1-384
Cow position: chr2:63289798-63290185 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 32

Conread position: 2-305
Cow position: chr2:4725104-4724785 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 72, 32

Conread position: 2-308
Cow position: chr2:8120827-8120511 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 0

Conread position: 2-310
Cow position: chr2:50079686-50079371 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 0

Conread position: 2-311
Cow position: chr2:974249-974564 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 236

Conread position: 2-311
Cow position: chr2:10184105-10184420 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 81

Conread position: 2-311
Cow position: chr2:12595098-12594782 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 60

Conread position: 2-311
Cow position: chr2:39691977-39691660 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 73, 134

Conread position: 2-384
Cow position: chr2:11694554-11694154 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 24

Conread position: 3-311
Cow position: chr2:7369797-7369485 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 220

Conread position: 3-311
Cow position: chr2:31455552-31455250 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 73

Conread position: 3-311
Cow position: chr2:71520568-71520876 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 210
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 70, 30

Conread position: 3-370
Cow position: chr2:16310093-16309716 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 42

Conread position: 4-302
Cow position: chr2:49632908-49632606 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 7

Conread position: 4-311
Cow position: chr2:65936101-65936418 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 0

Conread position: 5-311
Cow position: chr2:18160824-18161128 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 31

Conread position: 6-308
Cow position: chr2:58565608-58565904 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 24, 103

Conread position: 6-311
Cow position: chr2:32456947-32457254 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 57

Conread position: 13-311
Cow position: chr2:2086046-2086353 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 107

Conread position: 13-311
Cow position: chr2:2182156-2182461 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 0

Conread position: 13-311
Cow position: chr2:12753147-12752839 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr2:46908334-46908642 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr2:49460699-49461007 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr2:49629439-49629131 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr2:77858447-77858152 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 21

Conread position: 13-384
Cow position: chr2:57338072-57337674 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 14-311
Cow position: chr2:39424044-39423737 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 0

Conread position: 14-311
Cow position: chr2:41047137-41047444 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 0

Conread position: 14-311
Cow position: chr2:53004088-53004393 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 20

Conread position: 19-311
Cow position: chr2:8733149-8732847 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 29-311
Cow position: chr2:10263318-10263606 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 214

Conread position: 35-384
Cow position: chr2:42330753-42331131 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 55

Conread position: 36-311
Cow position: chr2:1433758-1434047 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 106, 8

Conread position: 38-310
Cow position: chr2:60366710-60366978 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 194
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 241, 19

Conread position: 46-311
Cow position: chr2:52064839-52064564 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 0

Conread position: 51-384
Cow position: chr2:52160789-52161150 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 159

Conread position: 52-311
Cow position: chr2:55482116-55482380 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 0

Conread position: 57-310
Cow position: chr2:67189663-67189401 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 61

Conread position: 63-311
Cow position: chr2:72689669-72689410 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 78-310
Cow position: chr2:16902439-16902201 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 45

Conread position: 83-310
Cow position: chr2:66597079-66596842 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 85-309
Cow position: chr2:28652075-28652304 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 180
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 162, 21

Conread position: 98-311
Cow position: chr2:8747117-8747339 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 139

Conread position: 121-311
Cow position: chr2:60673818-60674018 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 165
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 98, 0

Conread position: 122-311
Cow position: chr2:26903774-26903970 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 0

Conread position: 123-311
Cow position: chr2:81259178-81258985 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 153
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 14, 10

Conread position: 124-314
Cow position: chr2:9972691-9972491 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 127-311
Cow position: chr2:8085904-8085710 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 129-311
Cow position: chr2:6640805-6640613 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 158
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 90, 0

Conread position: 154-384
Cow position: chr2:18063544-18063797 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 184
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 204

Conread position: 156-311
Cow position: chr2:363095-363260 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 63, 0

Conread position: 157-311
Cow position: chr2:34500446-34500610 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 140
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 62, 0

Conread position: 159-311
Cow position: chr2:36048297-36048457 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 56, 44

Conread position: 174-311
Cow position: chr2:280739-280886 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 127
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 45, 0

Conread position: 174-311
Cow position: chr2:32640897-32640749 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 124
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 0

Conread position: 184-310
Cow position: chr2:12329572-12329442 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 70, 21

Conread position: 214-311
Cow position: chr2:36471771-36471875 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 90
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 216-311
Cow position: chr2:59423419-59423317 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.