Cow genome map
| Conread name: | rsin05_m18.y1 |
| Conread position: | 1-274 |
| Cow position: | chr21:17143432-17143154 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-304 |
| Cow position: | chr21:13112637-13112943 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 242 |
| Conread position: | 1-309 |
| Cow position: | chr21:27286200-27285887 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 240 |
| Conread position: | 1-311 |
| Cow position: | chr21:1195293-1194981 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 130 |
| Conread position: | 1-311 |
| Cow position: | chr21:3781542-3781213 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 1-311 |
| Cow position: | chr21:4078803-4078490 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 242 |
| Conread position: | 1-311 |
| Cow position: | chr21:5019901-5019582 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 1-311 |
| Cow position: | chr21:7062914-7063234 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr21:27068205-27068525 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr21:28615073-28614754 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 138 |
| Conread position: | 1-311 |
| Cow position: | chr21:37373980-37373662 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 33 |
| Conread position: | 1-311 |
| Cow position: | chr21:44763206-44763520 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 215 |
| Conread position: | 1-311 |
| Cow position: | chr21:46968927-46969244 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 136, 41 |
| Conread position: | 1-311 |
| Cow position: | chr21:46975319-46975623 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 2-277 |
| Cow position: | chr21:3587305-3587568 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 150, 33 |
| Conread position: | 2-305 |
| Cow position: | chr21:34255840-34256148 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 33 |
| Conread position: | 2-311 |
| Cow position: | chr21:10569447-10569133 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 11 |
| Conread position: | 2-311 |
| Cow position: | chr21:26401012-26401314 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 124 |
| Conread position: | 2-311 |
| Cow position: | chr21:30596334-30596653 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 2-311 |
| Cow position: | chr21:34902632-34902939 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 32 |
| Conread position: | 2-311 |
| Cow position: | chr21:37039862-37040178 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 294 |
| Conread position: | 2-311 |
| Cow position: | chr21:41796968-41797287 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 2-311 |
| Cow position: | chr21:47648090-47647772 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 3-311 |
| Cow position: | chr21:26699911-26700230 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 3-311 |
| Cow position: | chr21:32397296-32397615 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 13-311 |
| Cow position: | chr21:4092077-4091773 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 170 |
| Conread position: | 13-311 |
| Cow position: | chr21:6966729-6967024 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 35 |
| Conread position: | 13-311 |
| Cow position: | chr21:11291432-11291125 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 14-311 |
| Cow position: | chr21:4587244-4587557 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 20 |
| Conread position: | 14-311 |
| Cow position: | chr21:31513581-31513881 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 19 |
| Conread position: | 14-380 |
| Cow position: | chr21:27148811-27149206 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 15-311 |
| Cow position: | chr21:27620756-27621061 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 19-311 |
| Cow position: | chr21:29002583-29002889 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 195, 51 |
| Conread position: | 20-384 |
| Cow position: | chr21:4036982-4036598 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 41 |
| Conread position: | 29-311 |
| Cow position: | chr21:28853119-28853410 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 17 |
| Conread position: | 29-311 |
| Cow position: | chr21:38024819-38024534 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 190, 97 |
| Conread position: | 34-311 |
| Cow position: | chr21:36978185-36978467 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 92 |
| Conread position: | 38-311 |
| Cow position: | chr21:28987853-28987579 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 92 |
| Conread position: | 63-310 |
| Cow position: | chr21:9894843-9894585 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 63-311 |
| Cow position: | chr21:5011043-5011300 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 156, 75 |
| Conread position: | 75-311 |
| Cow position: | chr21:16831062-16830829 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 144, 56 |
| Conread position: | 108-309 |
| Cow position: | chr21:27610093-27610304 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 120-265 |
| Cow position: | chr21:4448735-4448593 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 128-311 |
| Cow position: | chr21:29949336-29949527 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 91, 72 |
| Conread position: | 148-309 |
| Cow position: | chr21:7038958-7038787 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 145 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 151-310 |
| Cow position: | chr21:28258021-28257855 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 174-311 |
| Cow position: | chr21:40269089-40269233 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 182-311 |
| Cow position: | chr21:19352500-19352361 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 192-311 |
| Cow position: | chr21:19613326-19613197 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 209-311 |
| Cow position: | chr21:10852765-10852656 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.