Cow genome map
| Conread name: | rsin05_m18.y1 |
| Conread position: | 1-309 |
| Cow position: | chr24:40467750-40468055 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 56 |
| Conread position: | 1-310 |
| Cow position: | chr24:7064232-7063915 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1-311 |
| Cow position: | chr24:6326703-6327018 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 32 |
| Conread position: | 1-311 |
| Cow position: | chr24:6412146-6411827 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 52 |
| Conread position: | 1-311 |
| Cow position: | chr24:8606995-8606694 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 99 |
| Conread position: | 1-311 |
| Cow position: | chr24:12333054-12333374 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr24:14195195-14195511 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 233 |
| Conread position: | 1-311 |
| Cow position: | chr24:14759548-14759231 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-311 |
| Cow position: | chr24:16559637-16559956 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 1-311 |
| Cow position: | chr24:19467919-19468239 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 1-311 |
| Cow position: | chr24:19688915-19689230 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 92 |
| Conread position: | 1-311 |
| Cow position: | chr24:20284679-20284996 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 30 |
| Conread position: | 1-311 |
| Cow position: | chr24:29189954-29189634 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr24:36724733-36724412 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 16 |
| Conread position: | 1-384 |
| Cow position: | chr24:11691332-11691740 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-384 |
| Cow position: | chr24:23093377-23093767 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 1-384 |
| Cow position: | chr24:23096115-23096505 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 1-384 |
| Cow position: | chr24:39680184-39679805 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 45 |
| Conread position: | 2-311 |
| Cow position: | chr24:16908003-16907693 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 34 |
| Conread position: | 2-376 |
| Cow position: | chr24:13300188-13300576 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 2-380 |
| Cow position: | chr24:6079096-6078701 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 160 |
| Conread position: | 3-308 |
| Cow position: | chr24:36556914-36557215 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 182 |
| Conread position: | 3-310 |
| Cow position: | chr24:12203702-12204013 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 32 |
| Conread position: | 3-310 |
| Cow position: | chr24:28030830-28031130 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 3-311 |
| Cow position: | chr24:6657591-6657905 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 209 |
| Conread position: | 3-311 |
| Cow position: | chr24:12698351-12698670 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 3-384 |
| Cow position: | chr24:12911247-12910852 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 13-311 |
| Cow position: | chr24:3850223-3849915 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr24:6440408-6440100 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr24:16081832-16082140 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr24:17323348-17323040 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr24:19704353-19704049 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 37 |
| Conread position: | 13-311 |
| Cow position: | chr24:20367021-20366713 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr24:21248292-21248600 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr24:22818497-22818193 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 13-384 |
| Cow position: | chr24:38584491-38584871 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 21 |
| Conread position: | 14-311 |
| Cow position: | chr24:12088855-12088551 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 18-310 |
| Cow position: | chr24:14723089-14722796 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 25-311 |
| Cow position: | chr24:11150481-11150774 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 0 |
| Conread position: | 38-311 |
| Cow position: | chr24:31085735-31085446 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 77-311 |
| Cow position: | chr24:22973660-22973419 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 84-311 |
| Cow position: | chr24:6069274-6069511 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 87-311 |
| Cow position: | chr24:36037633-36037864 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 92-380 |
| Cow position: | chr24:14335447-14335131 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 194 |
| Conread position: | 145-311 |
| Cow position: | chr24:4413034-4413202 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 132, 94 |
| Conread position: | 171-311 |
| Cow position: | chr24:17454633-17454783 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 174-311 |
| Cow position: | chr24:17312237-17312373 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 104, 65 |
| Conread position: | 174-312 |
| Cow position: | chr24:9072687-9072836 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 228-384 |
| Cow position: | chr24:6131216-6131059 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 91 |
Show alignments to all cow chromosomes.