Cow genome map
| Conread name: | rsin05_m18.y1 |
| Conread position: | 1-306 |
| Cow position: | chr28:20410192-20409884 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 212, 27 |
| Conread position: | 1-309 |
| Cow position: | chr28:10458608-10458917 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 56 |
| Conread position: | 1-311 |
| Cow position: | chr28:785286-784973 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 32 |
| Conread position: | 1-311 |
| Cow position: | chr28:1165265-1165583 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 64 |
| Conread position: | 1-311 |
| Cow position: | chr28:1215210-1215527 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:5112098-5112415 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:5210742-5210425 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:5940105-5939793 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 45 |
| Conread position: | 1-311 |
| Cow position: | chr28:7004628-7004309 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:7743762-7743445 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:8381667-8381349 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 33 |
| Conread position: | 1-311 |
| Cow position: | chr28:9181495-9181176 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 151 |
| Conread position: | 1-311 |
| Cow position: | chr28:12407593-12407909 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:13462584-13462272 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 222 |
| Conread position: | 1-311 |
| Cow position: | chr28:15033458-15033778 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:15686027-15685713 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 46 |
| Conread position: | 1-311 |
| Cow position: | chr28:17391035-17390715 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:17664702-17665014 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 184 |
| Conread position: | 1-311 |
| Cow position: | chr28:18517524-18517842 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:22230708-22231024 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 245 |
| Conread position: | 1-311 |
| Cow position: | chr28:24885481-24885161 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:29760007-29760322 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 1-311 |
| Cow position: | chr28:29822808-29822496 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 1-311 |
| Cow position: | chr28:30097498-30097178 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:30534441-30534761 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:30960234-30959918 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 57 |
| Conread position: | 1-311 |
| Cow position: | chr28:33639190-33638870 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr28:34596867-34596547 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 0 |
| Conread position: | 1-384 |
| Cow position: | chr28:2087085-2086684 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 207 |
| Conread position: | 1-384 |
| Cow position: | chr28:11787975-11788373 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 32 |
| Conread position: | 1-384 |
| Cow position: | chr28:33254943-33254532 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 2-298 |
| Cow position: | chr28:13605928-13605623 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 66, 23 |
| Conread position: | 2-311 |
| Cow position: | chr28:957507-957192 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 39, 20 |
| Conread position: | 2-311 |
| Cow position: | chr28:3189620-3189940 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 3-309 |
| Cow position: | chr28:21379155-21378842 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 297 |
| Conread position: | 3-311 |
| Cow position: | chr28:7335608-7335293 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 3-311 |
| Cow position: | chr28:29037026-29037344 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 12-309 |
| Cow position: | chr28:7813061-7812772 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 68 |
| Conread position: | 13-311 |
| Cow position: | chr28:1812330-1812629 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 135 |
| Conread position: | 13-311 |
| Cow position: | chr28:1955977-1955672 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 13-311 |
| Cow position: | chr28:2644327-2644019 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr28:5636438-5636142 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 226 |
| Conread position: | 13-311 |
| Cow position: | chr28:10302447-10302146 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 16 |
| Conread position: | 13-311 |
| Cow position: | chr28:25849022-25849330 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr28:34582532-34582224 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-384 |
| Cow position: | chr28:6536188-6536582 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 21 |
| Conread position: | 18-277 |
| Cow position: | chr28:22310660-22310403 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 66 |
| Conread position: | 18-311 |
| Cow position: | chr28:16596930-16596634 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 37 |
| Conread position: | 18-363 |
| Cow position: | chr28:22325271-22324924 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 240 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 19-311 |
| Cow position: | chr28:10579255-10579556 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 16 |
| Conread position: | 30-311 |
| Cow position: | chr28:7829081-7828802 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 8 |
| Conread position: | 37-311 |
| Cow position: | chr28:32588444-32588728 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 51-309 |
| Cow position: | chr28:34083948-34084210 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 122 |
| Conread position: | 61-273 |
| Cow position: | chr28:17188948-17188738 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 66-311 |
| Cow position: | chr28:3013412-3013663 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 30 |
| Conread position: | 68-311 |
| Cow position: | chr28:22040840-22041089 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 178 |
| Conread position: | 79-311 |
| Cow position: | chr28:21362029-21361807 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 175, 84 |
| Conread position: | 107-309 |
| Cow position: | chr28:13723738-13723543 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 170, 18 |
| Conread position: | 120-311 |
| Cow position: | chr28:26423760-26423958 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 157-311 |
| Cow position: | chr28:5568615-5568460 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 120, 66 |
| Conread position: | 163-314 |
| Cow position: | chr28:6231363-6231520 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 166-311 |
| Cow position: | chr28:30806229-30806074 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 184-309 |
| Cow position: | chr28:24560352-24560218 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 35, 27 |
| Conread position: | 205-311 |
| Cow position: | chr28:3626504-3626393 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 212-311 |
| Cow position: | chr28:1460515-1460409 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.