Cow genome map
| Conread name: | rsin05_m18.y1 |
| Conread position: | 1-310 |
| Cow position: | chr5:48806039-48806343 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 254 |
| Conread position: | 1-311 |
| Cow position: | chr5:444931-444615 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 49 |
| Conread position: | 1-311 |
| Cow position: | chr5:1339511-1339829 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 33 |
| Conread position: | 1-311 |
| Cow position: | chr5:3788638-3788318 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:3966847-3966529 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 50 |
| Conread position: | 1-311 |
| Cow position: | chr5:4963962-4964277 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 204 |
| Conread position: | 1-311 |
| Cow position: | chr5:6152480-6152796 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 177 |
| Conread position: | 1-311 |
| Cow position: | chr5:7276244-7275924 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:18120062-18120382 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:21523394-21523721 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:23957916-23958233 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 49 |
| Conread position: | 1-311 |
| Cow position: | chr5:29031684-29031364 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:34698896-34698577 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:44709969-44710289 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:45180682-45180999 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:45702732-45702415 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:46649556-46649235 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 32 |
| Conread position: | 1-311 |
| Cow position: | chr5:46666419-46666098 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:46735869-46736186 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:46792262-46791942 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr5:48226163-48226478 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 99 |
| Conread position: | 1-311 |
| Cow position: | chr5:49117931-49118242 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 245 |
| Conread position: | 1-311 |
| Cow position: | chr5:49521129-49520808 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 61 |
| Conread position: | 1-311 |
| Cow position: | chr5:58244410-58244727 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 51 |
| Conread position: | 1-311 |
| Cow position: | chr5:59063053-59062735 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 54 |
| Conread position: | 1-311 |
| Cow position: | chr5:68593182-68592871 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 194 |
| Conread position: | 1-311 |
| Cow position: | chr5:73486510-73486830 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 1-370 |
| Cow position: | chr5:4353017-4352653 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 218, 71 |
| Conread position: | 1-370 |
| Cow position: | chr5:54786697-54787099 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 1-380 |
| Cow position: | chr5:37423559-37423179 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 27 |
| Conread position: | 1-384 |
| Cow position: | chr5:5925550-5925961 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-384 |
| Cow position: | chr5:7141691-7142080 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 97 |
| Conread position: | 1-384 |
| Cow position: | chr5:26405133-26405530 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 1-384 |
| Cow position: | chr5:31120796-31121200 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 62 |
| Conread position: | 2-277 |
| Cow position: | chr5:24153039-24152771 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 2-285 |
| Cow position: | chr5:14877710-14877984 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 2-311 |
| Cow position: | chr5:3501718-3502030 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 44 |
| Conread position: | 2-311 |
| Cow position: | chr5:10921253-10920938 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 90 |
| Conread position: | 2-311 |
| Cow position: | chr5:12133003-12132694 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 93 |
| Conread position: | 2-311 |
| Cow position: | chr5:25929276-25929594 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 35 |
| Conread position: | 2-311 |
| Cow position: | chr5:51745631-51745324 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 46 |
| Conread position: | 2-311 |
| Cow position: | chr5:64779594-64779913 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 0 |
| Conread position: | 3-311 |
| Cow position: | chr5:10854407-10854723 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 3-311 |
| Cow position: | chr5:49222086-49222405 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 4-311 |
| Cow position: | chr5:41979892-41979600 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 30 |
| Conread position: | 13-311 |
| Cow position: | chr5:5105623-5105319 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 184 |
| Conread position: | 13-311 |
| Cow position: | chr5:11922727-11923035 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr5:14543902-14544207 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 246 |
| Conread position: | 13-311 |
| Cow position: | chr5:47827924-47828226 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 236 |
| Conread position: | 13-311 |
| Cow position: | chr5:50390720-50391013 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 143 |
| Conread position: | 13-311 |
| Cow position: | chr5:59145773-59145464 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 13-384 |
| Cow position: | chr5:37379492-37379139 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 103 |
| Conread position: | 14-311 |
| Cow position: | chr5:12730312-12730619 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 0 |
| Conread position: | 14-370 |
| Cow position: | chr5:4387619-4387249 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 111 |
| Conread position: | 14-384 |
| Cow position: | chr5:27196682-27197076 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 343 |
| Conread position: | 23-311 |
| Cow position: | chr5:12641051-12641350 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 0 |
| Conread position: | 29-310 |
| Cow position: | chr5:4755796-4756083 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 21 |
| Conread position: | 29-384 |
| Cow position: | chr5:34299255-34298890 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 191, 87 |
| Conread position: | 36-311 |
| Cow position: | chr5:38267697-38267981 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 80, 119 |
| Conread position: | 37-310 |
| Cow position: | chr5:57001878-57001596 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 274 |
| Conread position: | 37-311 |
| Cow position: | chr5:35496553-35496270 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 53-310 |
| Cow position: | chr5:40932582-40932307 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 6, 79 |
| Conread position: | 54-309 |
| Cow position: | chr5:5439772-5439515 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 55-311 |
| Cow position: | chr5:30567633-30567367 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 57-311 |
| Cow position: | chr5:68591088-68590827 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 91, 149 |
| Conread position: | 65-384 |
| Cow position: | chr5:2916776-2916437 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 67-311 |
| Cow position: | chr5:41525207-41525451 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 141, 26 |
| Conread position: | 88-312 |
| Cow position: | chr5:40130266-40130500 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 93-311 |
| Cow position: | chr5:52436325-52436099 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 127, 50 |
| Conread position: | 122-311 |
| Cow position: | chr5:4683507-4683706 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 127-277 |
| Cow position: | chr5:27655035-27654883 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 15 |
| Conread position: | 133-311 |
| Cow position: | chr5:55993161-55993345 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 153 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 121, 53 |
| Conread position: | 144-310 |
| Cow position: | chr5:4016820-4016992 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 145 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 144-311 |
| Cow position: | chr5:47358988-47358814 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 152-311 |
| Cow position: | chr5:41066442-41066273 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 154-311 |
| Cow position: | chr5:13407858-13407690 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 158-311 |
| Cow position: | chr5:23846861-23847025 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 165-311 |
| Cow position: | chr5:9056910-9056754 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 172-311 |
| Cow position: | chr5:280433-280285 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 174-311 |
| Cow position: | chr5:414624-414776 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 174-311 |
| Cow position: | chr5:24296844-24296701 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 174-311 |
| Cow position: | chr5:59284547-59284400 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 179-380 |
| Cow position: | chr5:32953320-32953106 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 73, 55 |
Show alignments to all cow chromosomes.