Cow genome map

Conread name: rsin05_m18.y1

Conread position: 1-309
Cow position: chr6:478097-477778 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 33

Conread position: 1-309
Cow position: chr6:1536257-1535934 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 1-309
Cow position: chr6:7138786-7139100 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 49

Conread position: 1-309
Cow position: chr6:30272338-30272656 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-309
Cow position: chr6:41676488-41676172 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 43

Conread position: 1-310
Cow position: chr6:916594-916275 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-310
Cow position: chr6:1820077-1820390 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 147

Conread position: 1-310
Cow position: chr6:25361840-25361529 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 228
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 218, 31

Conread position: 1-310
Cow position: chr6:36530836-36530521 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 219

Conread position: 1-310
Cow position: chr6:59595801-59595489 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 92

Conread position: 1-311
Cow position: chr6:49023-49341 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 240

Conread position: 1-311
Cow position: chr6:182993-183308 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 200

Conread position: 1-311
Cow position: chr6:704767-704446 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 0

Conread position: 1-311
Cow position: chr6:1106679-1106996 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 161

Conread position: 1-311
Cow position: chr6:1275444-1275763 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 0

Conread position: 1-311
Cow position: chr6:3886957-3887277 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr6:5947226-5947550 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 1-311
Cow position: chr6:6094783-6094468 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 49

Conread position: 1-311
Cow position: chr6:8204729-8204411 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 1-311
Cow position: chr6:10043764-10043448 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 49

Conread position: 1-311
Cow position: chr6:12663764-12664084 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr6:14133194-14133513 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 34

Conread position: 1-311
Cow position: chr6:14928010-14927693 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 0

Conread position: 1-311
Cow position: chr6:16767285-16767606 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 166

Conread position: 1-311
Cow position: chr6:20557400-20557713 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 205

Conread position: 1-311
Cow position: chr6:28186284-28186604 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr6:32001739-32002047 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 34

Conread position: 1-311
Cow position: chr6:37478771-37478455 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 115

Conread position: 1-311
Cow position: chr6:38874109-38874426 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 1-311
Cow position: chr6:39331981-39332296 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 33

Conread position: 1-311
Cow position: chr6:40277617-40277304 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 47

Conread position: 1-311
Cow position: chr6:40864480-40864796 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 212

Conread position: 1-311
Cow position: chr6:43777803-43777493 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 12

Conread position: 1-311
Cow position: chr6:43791023-43791349 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 1-311
Cow position: chr6:44018280-44018596 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 61

Conread position: 1-311
Cow position: chr6:45902336-45902656 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr6:45936810-45936497 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 49

Conread position: 1-311
Cow position: chr6:47040649-47040956 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 87

Conread position: 1-311
Cow position: chr6:50486245-50486565 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr6:51091916-51091593 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 1-311
Cow position: chr6:51732631-51732314 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 1-311
Cow position: chr6:55539720-55540040 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 0

Conread position: 1-311
Cow position: chr6:61052545-61052865 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-383
Cow position: chr6:50112652-50112249 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 210

Conread position: 1-384
Cow position: chr6:28278155-28277763 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 175

Conread position: 1-384
Cow position: chr6:40974735-40974326 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 33

Conread position: 2-278
Cow position: chr6:6162686-6162407 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 38, 136

Conread position: 2-308
Cow position: chr6:51717094-51716778 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 0

Conread position: 2-309
Cow position: chr6:29479543-29479222 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 219

Conread position: 2-311
Cow position: chr6:3485850-3486165 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 48

Conread position: 2-311
Cow position: chr6:11722646-11722965 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-311
Cow position: chr6:35874161-35874479 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 199

Conread position: 2-355
Cow position: chr6:39435373-39435751 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 114

Conread position: 2-378
Cow position: chr6:27527438-27527830 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 354

Conread position: 3-311
Cow position: chr6:13849623-13849307 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 26

Conread position: 3-311
Cow position: chr6:15138619-15138936 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 0

Conread position: 3-311
Cow position: chr6:15925023-15925330 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 210, 13

Conread position: 3-380
Cow position: chr6:16624365-16623988 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 274
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 248, 26

Conread position: 4-384
Cow position: chr6:63705110-63705487 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 63

Conread position: 13-276
Cow position: chr6:28064528-28064267 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 79

Conread position: 13-309
Cow position: chr6:34505507-34505810 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 49

Conread position: 13-309
Cow position: chr6:43620268-43619970 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 34

Conread position: 13-310
Cow position: chr6:16050753-16051058 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 68

Conread position: 13-311
Cow position: chr6:328822-329126 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 181

Conread position: 13-311
Cow position: chr6:2377241-2376939 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 233

Conread position: 13-311
Cow position: chr6:11870394-11870698 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 35

Conread position: 13-311
Cow position: chr6:13308848-13309152 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 37

Conread position: 13-311
Cow position: chr6:16592510-16592205 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 0

Conread position: 13-311
Cow position: chr6:18514075-18513787 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 33

Conread position: 13-311
Cow position: chr6:20351552-20351860 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr6:34128994-34128692 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 21

Conread position: 13-311
Cow position: chr6:34492692-34492386 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 49

Conread position: 13-311
Cow position: chr6:37387119-37386814 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 0

Conread position: 13-311
Cow position: chr6:39911865-39911557 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr6:40318123-40317815 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 20

Conread position: 13-311
Cow position: chr6:46296810-46296504 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 13-311
Cow position: chr6:51149479-51149171 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 221

Conread position: 13-311
Cow position: chr6:53544637-53544330 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 22

Conread position: 13-311
Cow position: chr6:55238232-55237924 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr6:62577645-62577952 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 0

Conread position: 13-311
Cow position: chr6:62664313-62664012 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 200

Conread position: 13-311
Cow position: chr6:65929785-65929472 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 13-380
Cow position: chr6:33465503-33465117 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 199

Conread position: 13-384
Cow position: chr6:27474951-27474573 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 36

Conread position: 14-311
Cow position: chr6:67553017-67552714 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 36

Conread position: 18-309
Cow position: chr6:3757268-3756970 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 0

Conread position: 19-311
Cow position: chr6:1408120-1408417 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 31

Conread position: 24-311
Cow position: chr6:10611367-10611072 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 224
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 92, 74

Conread position: 25-311
Cow position: chr6:25216829-25216535 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 37-311
Cow position: chr6:44148037-44148321 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 39-311
Cow position: chr6:31586749-31587031 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 48-311
Cow position: chr6:33810142-33809869 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 56-311
Cow position: chr6:40552089-40552344 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 20

Conread position: 99-311
Cow position: chr6:65844074-65843844 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 110, 0

Conread position: 110-269
Cow position: chr6:9734672-9734827 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 101, 0

Conread position: 146-311
Cow position: chr6:15895389-15895560 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 106, 76

Conread position: 147-311
Cow position: chr6:40000083-40000253 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 147
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 0

Conread position: 159-311
Cow position: chr6:13758117-13757955 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 138
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 60, 0

Conread position: 168-311
Cow position: chr6:32633205-32633052 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 12

Conread position: 175-311
Cow position: chr6:3274643-3274785 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 121
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 78, 92

Conread position: 176-337
Cow position: chr6:43800858-43801025 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 135
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 43, 135

Conread position: 192-311
Cow position: chr6:46479490-46479361 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 109
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 0

Show alignments to all cow chromosomes.