Cow genome map
| Conread name: | rsin05_m18.y1 | 
| Conread position: | 1-309 | 
| Cow position: | chr6:478097-477778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 33 | 
| Conread position: | 1-309 | 
| Cow position: | chr6:1536257-1535934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 0 | 
| Conread position: | 1-309 | 
| Cow position: | chr6:7138786-7139100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 49 | 
| Conread position: | 1-309 | 
| Cow position: | chr6:30272338-30272656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 1-309 | 
| Cow position: | chr6:41676488-41676172 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 43 | 
| Conread position: | 1-310 | 
| Cow position: | chr6:916594-916275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 1-310 | 
| Cow position: | chr6:1820077-1820390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 276, 147 | 
| Conread position: | 1-310 | 
| Cow position: | chr6:25361840-25361529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 218, 31 | 
| Conread position: | 1-310 | 
| Cow position: | chr6:36530836-36530521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 251, 219 | 
| Conread position: | 1-310 | 
| Cow position: | chr6:59595801-59595489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 92 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:49023-49341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 220, 240 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:182993-183308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 241, 200 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:704767-704446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:1106679-1106996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 161 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:1275444-1275763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:3886957-3887277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:5947226-5947550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:6094783-6094468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 49 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:8204729-8204411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:10043764-10043448 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 49 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:12663764-12664084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:14133194-14133513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 34 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:14928010-14927693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 252, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:16767285-16767606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 166 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:20557400-20557713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 276, 205 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:28186284-28186604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:32001739-32002047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 246, 34 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:37478771-37478455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 115 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:38874109-38874426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:39331981-39332296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 33 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:40277617-40277304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 47 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:40864480-40864796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 212 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:43777803-43777493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 276, 12 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:43791023-43791349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:44018280-44018596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 61 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:45902336-45902656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:45936810-45936497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 250, 49 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:47040649-47040956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 87 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:50486245-50486565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:51091916-51091593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:51732631-51732314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:55539720-55540040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 0 | 
| Conread position: | 1-311 | 
| Cow position: | chr6:61052545-61052865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 1-383 | 
| Cow position: | chr6:50112652-50112249 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 210 | 
| Conread position: | 1-384 | 
| Cow position: | chr6:28278155-28277763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 175 | 
| Conread position: | 1-384 | 
| Cow position: | chr6:40974735-40974326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 220, 33 | 
| Conread position: | 2-278 | 
| Cow position: | chr6:6162686-6162407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 4e-37 | 
| Alignm gaps (pig, cow): | 38, 136 | 
| Conread position: | 2-308 | 
| Cow position: | chr6:51717094-51716778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 208, 0 | 
| Conread position: | 2-309 | 
| Cow position: | chr6:29479543-29479222 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 114, 219 | 
| Conread position: | 2-311 | 
| Cow position: | chr6:3485850-3486165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 48 | 
| Conread position: | 2-311 | 
| Cow position: | chr6:11722646-11722965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 0 | 
| Conread position: | 2-311 | 
| Cow position: | chr6:35874161-35874479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 211, 199 | 
| Conread position: | 2-355 | 
| Cow position: | chr6:39435373-39435751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 114 | 
| Conread position: | 2-378 | 
| Cow position: | chr6:27527438-27527830 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 214, 354 | 
| Conread position: | 3-311 | 
| Cow position: | chr6:13849623-13849307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 26 | 
| Conread position: | 3-311 | 
| Cow position: | chr6:15138619-15138936 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 216, 0 | 
| Conread position: | 3-311 | 
| Cow position: | chr6:15925023-15925330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 210, 13 | 
| Conread position: | 3-380 | 
| Cow position: | chr6:16624365-16623988 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 248, 26 | 
| Conread position: | 4-384 | 
| Cow position: | chr6:63705110-63705487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 215, 63 | 
| Conread position: | 13-276 | 
| Cow position: | chr6:28064528-28064267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 79 | 
| Conread position: | 13-309 | 
| Cow position: | chr6:34505507-34505810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 49 | 
| Conread position: | 13-309 | 
| Cow position: | chr6:43620268-43619970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 34 | 
| Conread position: | 13-310 | 
| Cow position: | chr6:16050753-16051058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 68 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:328822-329126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 181 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:2377241-2376939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 233 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:11870394-11870698 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 35 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:13308848-13309152 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 37 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:16592510-16592205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 241, 0 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:18514075-18513787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 238, 33 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:20351552-20351860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 0 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:34128994-34128692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 240, 21 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:34492692-34492386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 49 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:37387119-37386814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 238, 0 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:39911865-39911557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 0 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:40318123-40317815 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 20 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:46296810-46296504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 0 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:51149479-51149171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 221 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:53544637-53544330 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 22 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:55238232-55237924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 0 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:62577645-62577952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 0 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:62664313-62664012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 241, 200 | 
| Conread position: | 13-311 | 
| Cow position: | chr6:65929785-65929472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 13-380 | 
| Cow position: | chr6:33465503-33465117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 264, 199 | 
| Conread position: | 13-384 | 
| Cow position: | chr6:27474951-27474573 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 241, 36 | 
| Conread position: | 14-311 | 
| Cow position: | chr6:67553017-67552714 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 36 | 
| Conread position: | 18-309 | 
| Cow position: | chr6:3757268-3756970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 236, 0 | 
| Conread position: | 19-311 | 
| Cow position: | chr6:1408120-1408417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 31 | 
| Conread position: | 24-311 | 
| Cow position: | chr6:10611367-10611072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 92, 74 | 
| Conread position: | 25-311 | 
| Cow position: | chr6:25216829-25216535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 0 | 
| Conread position: | 37-311 | 
| Cow position: | chr6:44148037-44148321 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 0 | 
| Conread position: | 39-311 | 
| Cow position: | chr6:31586749-31587031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 0 | 
| Conread position: | 48-311 | 
| Cow position: | chr6:33810142-33809869 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 0 | 
| Conread position: | 56-311 | 
| Cow position: | chr6:40552089-40552344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 221, 20 | 
| Conread position: | 99-311 | 
| Cow position: | chr6:65844074-65843844 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 1e-37 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 110-269 | 
| Cow position: | chr6:9734672-9734827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 101, 0 | 
| Conread position: | 146-311 | 
| Cow position: | chr6:15895389-15895560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 106, 76 | 
| Conread position: | 147-311 | 
| Cow position: | chr6:40000083-40000253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 104, 0 | 
| Conread position: | 159-311 | 
| Cow position: | chr6:13758117-13757955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 168-311 | 
| Cow position: | chr6:32633205-32633052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 22, 12 | 
| Conread position: | 175-311 | 
| Cow position: | chr6:3274643-3274785 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 78, 92 | 
| Conread position: | 176-337 | 
| Cow position: | chr6:43800858-43801025 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 7e-32 | 
| Alignm gaps (pig, cow): | 43, 135 | 
| Conread position: | 192-311 | 
| Cow position: | chr6:46479490-46479361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 27, 0 | 
Show alignments to all cow chromosomes.
