Cow genome map

Conread name: rsin05_m18.y1

Conread position: 1-276
Cow position: chr7:66011258-66010983 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 126

Conread position: 1-277
Cow position: chr7:62393157-62392888 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 41, 77

Conread position: 1-283
Cow position: chr7:22346395-22346109 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 236

Conread position: 1-299
Cow position: chr7:21125029-21125345 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 92

Conread position: 1-307
Cow position: chr7:3122519-3122207 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 33

Conread position: 1-308
Cow position: chr7:34488557-34488243 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 78

Conread position: 1-309
Cow position: chr7:29473085-29472780 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 40

Conread position: 1-309
Cow position: chr7:39596695-39597008 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 57

Conread position: 1-310
Cow position: chr7:33066070-33066381 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 75

Conread position: 1-310
Cow position: chr7:39095847-39096166 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 15

Conread position: 1-310
Cow position: chr7:42225154-42225471 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 1-311
Cow position: chr7:195257-195577 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr7:443617-443936 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 161

Conread position: 1-311
Cow position: chr7:547489-547179 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 49

Conread position: 1-311
Cow position: chr7:1368054-1368358 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 113

Conread position: 1-311
Cow position: chr7:6626733-6627052 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 105

Conread position: 1-311
Cow position: chr7:8142331-8142647 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 0

Conread position: 1-311
Cow position: chr7:10428780-10429098 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 1-311
Cow position: chr7:11420939-11421257 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 151

Conread position: 1-311
Cow position: chr7:13531264-13531581 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 1-311
Cow position: chr7:20558425-20558105 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 1-311
Cow position: chr7:21232365-21232680 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 33

Conread position: 1-311
Cow position: chr7:21989276-21988958 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 0

Conread position: 1-311
Cow position: chr7:27099629-27099949 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 0

Conread position: 1-311
Cow position: chr7:37165503-37165191 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 16

Conread position: 1-311
Cow position: chr7:39132190-39132506 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 45

Conread position: 1-311
Cow position: chr7:39552701-39553008 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 32

Conread position: 1-311
Cow position: chr7:45953356-45953029 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 133

Conread position: 1-311
Cow position: chr7:46265805-46265489 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 49

Conread position: 1-311
Cow position: chr7:47191100-47191414 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 135

Conread position: 1-311
Cow position: chr7:51016874-51016569 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 16

Conread position: 1-311
Cow position: chr7:57025413-57025721 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 52

Conread position: 1-311
Cow position: chr7:58336381-58336698 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 0

Conread position: 1-311
Cow position: chr7:60465361-60465041 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr7:66572370-66572681 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 232
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 64, 121

Conread position: 1-311
Cow position: chr7:66907894-66907573 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 176

Conread position: 1-311
Cow position: chr7:68234974-68234666 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 252

Conread position: 1-312
Cow position: chr7:34151587-34151267 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 34

Conread position: 1-312
Cow position: chr7:34414414-34414733 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 1-314
Cow position: chr7:27107114-27107435 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 1-349
Cow position: chr7:27578291-27578643 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 32

Conread position: 1-370
Cow position: chr7:42297648-42298023 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 33

Conread position: 1-383
Cow position: chr7:27712042-27711662 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 1-384
Cow position: chr7:60727815-60728220 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 2-305
Cow position: chr7:34667552-34667249 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 28, 34

Conread position: 2-306
Cow position: chr7:19044568-19044881 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 43

Conread position: 2-309
Cow position: chr7:58920590-58920270 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 140

Conread position: 2-311
Cow position: chr7:736107-736424 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 121

Conread position: 2-311
Cow position: chr7:27458092-27458411 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 0

Conread position: 2-311
Cow position: chr7:42302822-42303129 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 32

Conread position: 2-311
Cow position: chr7:62990122-62990436 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 32

Conread position: 2-311
Cow position: chr7:64246958-64247275 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 210

Conread position: 2-311
Cow position: chr7:68897284-68896970 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 224
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 150, 25

Conread position: 2-358
Cow position: chr7:1722507-1722872 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 32

Conread position: 2-384
Cow position: chr7:26837057-26836661 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 198

Conread position: 2-384
Cow position: chr7:39144503-39144123 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 90

Conread position: 2-384
Cow position: chr7:49827707-49828103 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 58

Conread position: 3-310
Cow position: chr7:55039838-55040156 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 3-311
Cow position: chr7:11461488-11461807 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 3-311
Cow position: chr7:58349403-58349716 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 232
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 100, 56

Conread position: 3-311
Cow position: chr7:64352369-64352054 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 31

Conread position: 3-384
Cow position: chr7:5260298-5260700 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 4-384
Cow position: chr7:61624036-61624432 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 88

Conread position: 11-311
Cow position: chr7:21314521-21314221 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 25

Conread position: 11-311
Cow position: chr7:24932926-24933233 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 0

Conread position: 13-311
Cow position: chr7:3298039-3298349 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr7:20151087-20151391 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 37

Conread position: 13-311
Cow position: chr7:25442401-25442105 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 35

Conread position: 13-311
Cow position: chr7:45170168-45169860 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 0

Conread position: 13-311
Cow position: chr7:49603940-49604248 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 13-311
Cow position: chr7:64354647-64354340 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 290

Conread position: 13-311
Cow position: chr7:65557790-65558094 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 37

Conread position: 14-311
Cow position: chr7:113245-112935 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 193

Conread position: 14-311
Cow position: chr7:28087697-28087417 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 232
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 203, 20

Conread position: 14-311
Cow position: chr7:52408167-52407863 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 35

Conread position: 16-311
Cow position: chr7:29363842-29364132 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 76

Conread position: 17-311
Cow position: chr7:6801821-6801521 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 114

Conread position: 18-277
Cow position: chr7:18855793-18855534 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 19, 116

Conread position: 18-311
Cow position: chr7:38146097-38146406 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 16

Conread position: 19-311
Cow position: chr7:41873644-41873940 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 227

Conread position: 19-311
Cow position: chr7:63388643-63388354 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 29

Conread position: 29-309
Cow position: chr7:67496840-67496554 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 6

Conread position: 37-311
Cow position: chr7:21322848-21322567 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 0

Conread position: 37-312
Cow position: chr7:33403275-33403560 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 44-311
Cow position: chr7:38399415-38399143 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 20

Conread position: 46-311
Cow position: chr7:20062071-20061800 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 200

Conread position: 54-310
Cow position: chr7:26160010-26160271 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 194
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 77

Conread position: 73-311
Cow position: chr7:41493419-41493171 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 73-311
Cow position: chr7:46900019-46900267 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 112-311
Cow position: chr7:20785505-20785305 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 122, 104

Conread position: 119-311
Cow position: chr7:43395651-43395851 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 140-311
Cow position: chr7:3321631-3321812 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 150
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 79, 0

Conread position: 143-311
Cow position: chr7:56823219-56823043 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 140
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 76, 0

Conread position: 144-309
Cow position: chr7:24744170-24744346 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 78, 0

Conread position: 155-311
Cow position: chr7:3127829-3127666 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 139
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 99, 0

Conread position: 157-379
Cow position: chr7:38962215-38962449 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 167
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 62, 24

Conread position: 174-311
Cow position: chr7:42427317-42427170 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 123
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 45, 0

Conread position: 174-311
Cow position: chr7:45946677-45946824 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 124
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 45, 0

Conread position: 177-311
Cow position: chr7:62607855-62607998 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 125
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 34, 0

Conread position: 187-370
Cow position: chr7:54853643-54853446 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 32, 59

Conread position: 202-311
Cow position: chr7:30300862-30300981 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 17, 0

Show alignments to all cow chromosomes.