Cow genome map

Conread name: rsin05_m18.y1

Conread position: 1-309
Cow position: chr8:27154304-27154621 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 199

Conread position: 1-309
Cow position: chr8:49219770-49219451 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 1-310
Cow position: chr8:21252068-21251752 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 0

Conread position: 1-311
Cow position: chr8:1934861-1935174 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 187

Conread position: 1-311
Cow position: chr8:3333858-3333535 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 272

Conread position: 1-311
Cow position: chr8:4689227-4688907 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 1-311
Cow position: chr8:8399290-8399591 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 35

Conread position: 1-311
Cow position: chr8:8515256-8515576 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr8:12312059-12312372 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 242

Conread position: 1-311
Cow position: chr8:14589048-14589363 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 45

Conread position: 1-311
Cow position: chr8:14630402-14630722 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr8:14926061-14926370 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 102

Conread position: 1-311
Cow position: chr8:18403503-18403820 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 148

Conread position: 1-311
Cow position: chr8:23773462-23773145 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 97

Conread position: 1-311
Cow position: chr8:24913463-24913779 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 32

Conread position: 1-311
Cow position: chr8:29922540-29922835 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 92

Conread position: 1-311
Cow position: chr8:34399378-34399071 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 46

Conread position: 1-311
Cow position: chr8:35128969-35129289 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 50

Conread position: 1-311
Cow position: chr8:35472124-35471813 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 193

Conread position: 1-311
Cow position: chr8:42486734-42486419 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 105

Conread position: 1-311
Cow position: chr8:47489386-47489691 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 139

Conread position: 1-311
Cow position: chr8:47659493-47659809 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 1-311
Cow position: chr8:49285235-49285555 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 1-311
Cow position: chr8:50928278-50928591 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 242

Conread position: 1-311
Cow position: chr8:59260114-59260432 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 213

Conread position: 1-370
Cow position: chr8:8228574-8228956 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 33

Conread position: 1-370
Cow position: chr8:55087367-55086979 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 137

Conread position: 1-378
Cow position: chr8:32316757-32317142 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 350

Conread position: 1-380
Cow position: chr8:46059138-46059530 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 32

Conread position: 1-384
Cow position: chr8:12451880-12451464 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 0

Conread position: 2-309
Cow position: chr8:5019838-5019521 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-309
Cow position: chr8:51701152-51700835 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 115

Conread position: 2-310
Cow position: chr8:2167692-2168006 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 244

Conread position: 2-310
Cow position: chr8:58183811-58184120 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 95

Conread position: 2-311
Cow position: chr8:4273097-4272784 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 81

Conread position: 2-311
Cow position: chr8:20090773-20091096 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 264

Conread position: 2-311
Cow position: chr8:38044306-38044622 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 2-311
Cow position: chr8:38393459-38393140 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-311
Cow position: chr8:38589530-38589840 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 32

Conread position: 2-311
Cow position: chr8:39193091-39193410 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-311
Cow position: chr8:44240866-44241179 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 114

Conread position: 2-311
Cow position: chr8:45792923-45793242 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 2-311
Cow position: chr8:47675666-47675350 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 165

Conread position: 2-311
Cow position: chr8:47888687-47888360 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 0

Conread position: 2-325
Cow position: chr8:6492675-6492995 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 54, 16

Conread position: 2-384
Cow position: chr8:33591185-33590800 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 44

Conread position: 3-276
Cow position: chr8:32629186-32629460 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 116

Conread position: 3-308
Cow position: chr8:41741295-41740992 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 213
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 249, 25

Conread position: 3-311
Cow position: chr8:3226076-3226378 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 24, 35

Conread position: 3-311
Cow position: chr8:46801086-46801407 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 6-311
Cow position: chr8:11777476-11777170 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 23

Conread position: 13-311
Cow position: chr8:1151469-1151762 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 109

Conread position: 13-311
Cow position: chr8:12446593-12446893 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 143

Conread position: 13-311
Cow position: chr8:17382299-17382604 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 0

Conread position: 13-311
Cow position: chr8:21154533-21154837 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 37

Conread position: 13-311
Cow position: chr8:29628797-29629105 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 13-311
Cow position: chr8:36333499-36333804 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 0

Conread position: 13-311
Cow position: chr8:53837755-53837455 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 174

Conread position: 13-311
Cow position: chr8:55271715-55272017 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 29

Conread position: 15-311
Cow position: chr8:43230-43528 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 101

Conread position: 15-311
Cow position: chr8:1467939-1467633 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 16-310
Cow position: chr8:1582268-1581963 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 0

Conread position: 19-311
Cow position: chr8:10751152-10750854 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 203

Conread position: 20-384
Cow position: chr8:9640703-9640311 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 43

Conread position: 29-309
Cow position: chr8:51037786-51038083 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 208
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 97, 0

Conread position: 34-311
Cow position: chr8:47467879-47468164 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 36-380
Cow position: chr8:18577963-18578300 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 251
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 183, 54

Conread position: 38-310
Cow position: chr8:11764745-11764461 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 143, 121

Conread position: 38-311
Cow position: chr8:29919202-29919471 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 95

Conread position: 39-310
Cow position: chr8:42655209-42655482 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 150, 171

Conread position: 44-309
Cow position: chr8:36633730-36634002 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 98

Conread position: 50-311
Cow position: chr8:9738311-9738044 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 148

Conread position: 63-311
Cow position: chr8:24191740-24191482 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 64-311
Cow position: chr8:27819666-27819419 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 180
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 26, 70

Conread position: 65-311
Cow position: chr8:21041861-21042117 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 0

Conread position: 73-311
Cow position: chr8:27591025-27591255 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 189
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 182, 98

Conread position: 75-311
Cow position: chr8:40890556-40890785 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 103, 65

Conread position: 77-310
Cow position: chr8:23386012-23386248 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 174, 80

Conread position: 77-311
Cow position: chr8:16733540-16733307 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 134, 163

Conread position: 87-311
Cow position: chr8:4296856-4296627 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 31

Conread position: 94-311
Cow position: chr8:11604967-11604740 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 86, 58

Conread position: 103-311
Cow position: chr8:43541824-43542042 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 130-310
Cow position: chr8:55341627-55341441 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 108, 36

Conread position: 142-311
Cow position: chr8:45157854-45158035 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 74, 0

Conread position: 156-310
Cow position: chr8:10740967-10741131 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 142
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 165-309
Cow position: chr8:50996452-50996303 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 132
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 89, 95

Conread position: 185-311
Cow position: chr8:8954170-8954306 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 115
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 207-311
Cow position: chr8:38088542-38088433 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 96
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 212-311
Cow position: chr8:51068681-51068575 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 92
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 39, 0

Show alignments to all cow chromosomes.