Cow genome map
| Conread name: | rsin05_m18.y1 |
| Conread position: | 1-277 |
| Cow position: | chr9:35593601-35593878 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 1-298 |
| Cow position: | chr9:5453731-5453429 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-307 |
| Cow position: | chr9:9198587-9198280 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 33 |
| Conread position: | 1-309 |
| Cow position: | chr9:2209346-2209651 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 74 |
| Conread position: | 1-309 |
| Cow position: | chr9:9015553-9015235 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-310 |
| Cow position: | chr9:1728826-1729147 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 1-310 |
| Cow position: | chr9:43302741-43303058 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 314 |
| Conread position: | 1-311 |
| Cow position: | chr9:791833-792149 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 203 |
| Conread position: | 1-311 |
| Cow position: | chr9:1983296-1982982 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 155 |
| Conread position: | 1-311 |
| Cow position: | chr9:5534739-5535057 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:6251749-6251421 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:7059584-7059904 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:10939202-10938885 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:13473301-13473619 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 161 |
| Conread position: | 1-311 |
| Cow position: | chr9:17061916-17062227 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 1-311 |
| Cow position: | chr9:17303490-17303805 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 91 |
| Conread position: | 1-311 |
| Cow position: | chr9:18507348-18507665 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:19156806-19157121 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 46 |
| Conread position: | 1-311 |
| Cow position: | chr9:27037590-27037270 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:28024288-28023969 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-311 |
| Cow position: | chr9:28357043-28356725 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 101 |
| Conread position: | 1-311 |
| Cow position: | chr9:28658570-28658890 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 1-311 |
| Cow position: | chr9:28680453-28680134 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 115 |
| Conread position: | 1-311 |
| Cow position: | chr9:30674549-30674229 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:31810057-31809744 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 45 |
| Conread position: | 1-311 |
| Cow position: | chr9:32971856-32971536 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:33950730-33951038 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 1-311 |
| Cow position: | chr9:34770635-34770327 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 199 |
| Conread position: | 1-311 |
| Cow position: | chr9:37160330-37160652 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:50326323-50326004 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 1-311 |
| Cow position: | chr9:51179693-51180013 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 1-366 |
| Cow position: | chr9:1639219-1638838 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 28 |
| Conread position: | 1-369 |
| Cow position: | chr9:5627297-5626902 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1-380 |
| Cow position: | chr9:20780384-20779977 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 395 |
| Conread position: | 1-384 |
| Cow position: | chr9:2496247-2496653 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 200 |
| Conread position: | 2-309 |
| Cow position: | chr9:7005196-7004890 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 169 |
| Conread position: | 2-310 |
| Cow position: | chr9:47005220-47004901 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 2-311 |
| Cow position: | chr9:5006454-5006138 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 2-311 |
| Cow position: | chr9:21411787-21411471 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 2-311 |
| Cow position: | chr9:59508690-59509007 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 217, 39 |
| Conread position: | 2-370 |
| Cow position: | chr9:17900095-17900480 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 26 |
| Conread position: | 3-311 |
| Cow position: | chr9:2681052-2680733 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 3-311 |
| Cow position: | chr9:9515533-9515228 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 3-311 |
| Cow position: | chr9:59480372-59480690 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 4-276 |
| Cow position: | chr9:2526766-2526491 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 4-310 |
| Cow position: | chr9:22320228-22320537 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 239 |
| Conread position: | 13-310 |
| Cow position: | chr9:48795826-48796133 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr9:2213612-2213306 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 187 |
| Conread position: | 13-311 |
| Cow position: | chr9:34240633-34240940 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 220 |
| Conread position: | 13-311 |
| Cow position: | chr9:42312159-42311854 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 13-311 |
| Cow position: | chr9:45875986-45875678 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr9:47044437-47044129 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 13-311 |
| Cow position: | chr9:52525624-52525316 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 19-286 |
| Cow position: | chr9:2865531-2865797 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 152, 14 |
| Conread position: | 29-311 |
| Cow position: | chr9:2631051-2630761 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 9 |
| Conread position: | 31-294 |
| Cow position: | chr9:5861417-5861685 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 7 |
| Conread position: | 37-310 |
| Cow position: | chr9:19108762-19108474 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 40-311 |
| Cow position: | chr9:23421033-23420773 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 180, 43 |
| Conread position: | 45-311 |
| Cow position: | chr9:18023374-18023112 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 55 |
| Conread position: | 46-310 |
| Cow position: | chr9:38678568-38678295 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 17 |
| Conread position: | 62-311 |
| Cow position: | chr9:8164480-8164729 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 68 |
| Conread position: | 73-384 |
| Cow position: | chr9:46040849-46041185 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 327 |
| Conread position: | 93-310 |
| Cow position: | chr9:33593525-33593298 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 98-277 |
| Cow position: | chr9:12182039-12182219 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 156, 109 |
| Conread position: | 118-311 |
| Cow position: | chr9:59538466-59538263 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 121-311 |
| Cow position: | chr9:22437309-22437106 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 94 |
| Conread position: | 163-311 |
| Cow position: | chr9:10644383-10644225 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 174-311 |
| Cow position: | chr9:17313810-17313663 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 176-277 |
| Cow position: | chr9:60461431-60461537 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 178-310 |
| Cow position: | chr9:4307046-4307190 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 182-311 |
| Cow position: | chr9:1994112-1994248 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 212-309 |
| Cow position: | chr9:22433490-22433386 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 214-311 |
| Cow position: | chr9:2607906-2607802 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
Show alignments to all cow chromosomes.