Cow genome map
| Conread name: | rspl32_c12.y1 |
| Conread position: | 31-420 |
| Cow position: | chr3:34116419-34116019 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 244, 32 |
| Conread position: | 31-442 |
| Cow position: | chr3:46224840-46225245 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 78 |
| Conread position: | 31-442 |
| Cow position: | chr3:74848220-74847814 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 32-442 |
| Cow position: | chr3:34087249-34086836 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 35-442 |
| Cow position: | chr3:56102697-56103106 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 20 |
| Conread position: | 43-442 |
| Cow position: | chr3:64875734-64876139 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 49-441 |
| Cow position: | chr3:55374052-55374441 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 45 |
| Conread position: | 50-267 |
| Cow position: | chr3:63276890-63276681 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 50-442 |
| Cow position: | chr3:15663469-15663082 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 43 |
| Conread position: | 50-442 |
| Cow position: | chr3:65084903-65085300 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 41 |
| Conread position: | 51-267 |
| Cow position: | chr3:2921228-2921440 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 51-267 |
| Cow position: | chr3:48845976-48846188 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 51-269 |
| Cow position: | chr3:65177980-65178194 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 51-414 |
| Cow position: | chr3:13723743-13723373 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 39 |
| Conread position: | 51-414 |
| Cow position: | chr3:15416436-15416805 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr3:20379747-20379380 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr3:20795263-20795632 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr3:24265172-24265537 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr3:31021652-31022018 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr3:44926784-44927156 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-414 |
| Cow position: | chr3:46858313-46857945 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr3:47986411-47986778 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 37 |
| Conread position: | 51-414 |
| Cow position: | chr3:50204535-50204903 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr3:66968909-66968541 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 40 |
| Conread position: | 51-426 |
| Cow position: | chr3:49611238-49610856 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-434 |
| Cow position: | chr3:31224249-31224634 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-435 |
| Cow position: | chr3:72633043-72633432 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-440 |
| Cow position: | chr3:36671651-36671253 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 42 |
| Conread position: | 51-442 |
| Cow position: | chr3:2074753-2075146 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 40 |
| Conread position: | 51-442 |
| Cow position: | chr3:2866685-2866289 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-442 |
| Cow position: | chr3:4030725-4031109 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 272 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 242, 29 |
| Conread position: | 51-442 |
| Cow position: | chr3:6837999-6838395 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-442 |
| Cow position: | chr3:7476950-7476553 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-442 |
| Cow position: | chr3:21000119-20999705 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 42 |
| Conread position: | 51-442 |
| Cow position: | chr3:27866626-27867028 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 53 |
| Conread position: | 51-442 |
| Cow position: | chr3:29574156-29573762 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 38 |
| Conread position: | 51-442 |
| Cow position: | chr3:38862705-38863086 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 280 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 132, 42 |
| Conread position: | 51-442 |
| Cow position: | chr3:64376739-64376349 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 30 |
| Conread position: | 51-442 |
| Cow position: | chr3:64684038-64683630 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 51-442 |
| Cow position: | chr3:68510366-68509973 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-442 |
| Cow position: | chr3:78024460-78024073 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-443 |
| Cow position: | chr3:64317710-64318106 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 19 |
| Conread position: | 51-443 |
| Cow position: | chr3:74060442-74060837 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 19 |
| Conread position: | 52-435 |
| Cow position: | chr3:20475484-20475867 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 53-343 |
| Cow position: | chr3:19798180-19797884 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 222, 38 |
| Conread position: | 54-278 |
| Cow position: | chr3:14054246-14054467 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 54-442 |
| Cow position: | chr3:64171201-64171606 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 297 |
| Conread position: | 62-267 |
| Cow position: | chr3:51255880-51256073 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 72-431 |
| Cow position: | chr3:54291254-54291609 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 28 |
| Conread position: | 73-442 |
| Cow position: | chr3:79668099-79668476 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 18 |
| Conread position: | 101-442 |
| Cow position: | chr3:24351711-24352053 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 103-442 |
| Cow position: | chr3:37972053-37972394 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 189 |
| Conread position: | 106-441 |
| Cow position: | chr3:22352639-22352979 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 116-443 |
| Cow position: | chr3:62794044-62793714 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 161 |
| Conread position: | 121-442 |
| Cow position: | chr3:5886923-5887250 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 274 |
| Conread position: | 123-442 |
| Cow position: | chr3:16657828-16657508 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 155, 77 |
| Conread position: | 123-442 |
| Cow position: | chr3:26722774-26722445 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 124-442 |
| Cow position: | chr3:42500107-42500429 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 128-442 |
| Cow position: | chr3:3300686-3301008 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 200 |
| Conread position: | 151-442 |
| Cow position: | chr3:19795025-19794725 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 151-442 |
| Cow position: | chr3:64024965-64024665 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 296 |
| Conread position: | 157-435 |
| Cow position: | chr3:579247-579532 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 135 |
| Conread position: | 165-432 |
| Cow position: | chr3:42602737-42603026 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 166-442 |
| Cow position: | chr3:13248938-13248657 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 109, 149 |
| Conread position: | 166-442 |
| Cow position: | chr3:79595717-79595999 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 109, 29 |
| Conread position: | 167-443 |
| Cow position: | chr3:59332664-59332951 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 81, 145 |
| Conread position: | 176-441 |
| Cow position: | chr3:2117537-2117811 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 6, 217 |
| Conread position: | 186-411 |
| Cow position: | chr3:46682935-46683169 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 193-442 |
| Cow position: | chr3:70322564-70322308 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 92, 202 |
| Conread position: | 201-442 |
| Cow position: | chr3:14279803-14280046 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 134, 92 |
| Conread position: | 203-414 |
| Cow position: | chr3:64655329-64655547 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 209-384 |
| Cow position: | chr3:44536863-44536679 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 210-442 |
| Cow position: | chr3:41057089-41057326 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 8 |
| Conread position: | 233-415 |
| Cow position: | chr3:46006252-46006431 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 104, 58 |
Show alignments to all cow chromosomes.