Cow genome map
| Conread name: | rspl32_c12.y1 |
| Conread position: | 30-376 |
| Cow position: | chr5:3252294-3251953 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 279, 24 |
| Conread position: | 30-442 |
| Cow position: | chr5:27690843-27691252 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 31-314 |
| Cow position: | chr5:6986635-6986352 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 31-376 |
| Cow position: | chr5:57983993-57983648 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 31-442 |
| Cow position: | chr5:51501739-51502156 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 62 |
| Conread position: | 36-434 |
| Cow position: | chr5:40791696-40792096 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 46-354 |
| Cow position: | chr5:72346241-72345914 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 144, 47 |
| Conread position: | 50-432 |
| Cow position: | chr5:46649982-46650359 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 277 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 169, 9 |
| Conread position: | 50-442 |
| Cow position: | chr5:1339048-1338649 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 43 |
| Conread position: | 50-442 |
| Cow position: | chr5:7396123-7396515 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 43 |
| Conread position: | 51-267 |
| Cow position: | chr5:6615418-6615205 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 51-359 |
| Cow position: | chr5:69770956-69771252 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 227, 7 |
| Conread position: | 51-414 |
| Cow position: | chr5:24577311-24577680 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr5:59064319-59064687 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-426 |
| Cow position: | chr5:3970400-3970782 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-440 |
| Cow position: | chr5:18249934-18250317 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:2976661-2977056 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 40 |
| Conread position: | 51-442 |
| Cow position: | chr5:3789103-3789495 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:5106100-5106494 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 40 |
| Conread position: | 51-442 |
| Cow position: | chr5:10921720-10922117 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:14543425-14543029 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 38 |
| Conread position: | 51-442 |
| Cow position: | chr5:15454652-15455036 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 45 |
| Conread position: | 51-442 |
| Cow position: | chr5:17026953-17027337 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 51-442 |
| Cow position: | chr5:18491281-18491680 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:21189096-21189490 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:24298888-24299285 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:37735251-37735647 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:47560686-47560288 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:49221617-49221227 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-442 |
| Cow position: | chr5:51166433-51166039 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 26 |
| Conread position: | 51-442 |
| Cow position: | chr5:52823331-52822937 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:55630939-55631336 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-442 |
| Cow position: | chr5:58198885-58199280 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 40 |
| Conread position: | 51-443 |
| Cow position: | chr5:46779391-46779788 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 40 |
| Conread position: | 52-414 |
| Cow position: | chr5:59146253-59146621 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 41 |
| Conread position: | 52-442 |
| Cow position: | chr5:3544184-3544568 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 41 |
| Conread position: | 52-442 |
| Cow position: | chr5:58191793-58192186 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 39 |
| Conread position: | 52-442 |
| Cow position: | chr5:63312641-63312252 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 36 |
| Conread position: | 53-267 |
| Cow position: | chr5:7276710-7276920 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 53-414 |
| Cow position: | chr5:51746100-51746462 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 35 |
| Conread position: | 53-442 |
| Cow position: | chr5:443432-443038 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 38 |
| Conread position: | 55-414 |
| Cow position: | chr5:6585574-6585210 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 36 |
| Conread position: | 55-442 |
| Cow position: | chr5:31634306-31634708 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 38 |
| Conread position: | 93-442 |
| Cow position: | chr5:64061242-64061598 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 352 |
| Conread position: | 101-379 |
| Cow position: | chr5:70531540-70531259 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 80 |
| Conread position: | 118-442 |
| Cow position: | chr5:6576653-6576320 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 157, 53 |
| Conread position: | 123-435 |
| Cow position: | chr5:31916569-31916876 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 166, 58 |
| Conread position: | 128-442 |
| Cow position: | chr5:45704968-45705283 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 10, 69 |
| Conread position: | 129-422 |
| Cow position: | chr5:27613192-27613476 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 33 |
| Conread position: | 132-442 |
| Cow position: | chr5:34708722-34709041 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 137-442 |
| Cow position: | chr5:17387459-17387145 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 149-443 |
| Cow position: | chr5:15677031-15677333 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 151-442 |
| Cow position: | chr5:50899606-50899905 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 151-442 |
| Cow position: | chr5:75755557-75755844 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 143 |
| Conread position: | 152-442 |
| Cow position: | chr5:43991256-43991554 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 126, 6 |
| Conread position: | 161-414 |
| Cow position: | chr5:26073804-26073544 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 114, 176 |
| Conread position: | 164-414 |
| Cow position: | chr5:55722514-55722773 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 164-442 |
| Cow position: | chr5:57936137-57935837 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 178-442 |
| Cow position: | chr5:35207241-35207514 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 178-442 |
| Cow position: | chr5:58245331-58245604 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 97, 172 |
| Conread position: | 192-441 |
| Cow position: | chr5:29558610-29558866 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 194-411 |
| Cow position: | chr5:39362887-39363113 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 201-442 |
| Cow position: | chr5:16895126-16894879 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 14, 116 |
| Conread position: | 220-442 |
| Cow position: | chr5:8529692-8529917 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 225-435 |
| Cow position: | chr5:60446479-60446697 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 226-436 |
| Cow position: | chr5:46796955-46797166 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 72, 89 |
Show alignments to all cow chromosomes.