Cow genome map
| Conread name: | rspl32_c12.y1 |
| Conread position: | 25-424 |
| Cow position: | chr9:3222389-3222790 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 30-442 |
| Cow position: | chr9:5517105-5517518 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 65 |
| Conread position: | 31-442 |
| Cow position: | chr9:30401203-30401622 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 31-442 |
| Cow position: | chr9:59196775-59197190 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 33-311 |
| Cow position: | chr9:17008042-17007756 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 19, 66 |
| Conread position: | 42-442 |
| Cow position: | chr9:19078802-19079204 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 50-276 |
| Cow position: | chr9:31077902-31078121 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 51-267 |
| Cow position: | chr9:1249054-1248841 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 51-345 |
| Cow position: | chr9:43225758-43225462 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-384 |
| Cow position: | chr9:10939667-10939996 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-414 |
| Cow position: | chr9:777871-777499 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 51-414 |
| Cow position: | chr9:28681143-28681512 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr9:39303610-39303241 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-414 |
| Cow position: | chr9:47044890-47045259 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-416 |
| Cow position: | chr9:62444032-62443669 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 42 |
| Conread position: | 51-435 |
| Cow position: | chr9:44203137-44202747 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 51-435 |
| Cow position: | chr9:47170995-47171386 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 40 |
| Conread position: | 51-442 |
| Cow position: | chr9:2495798-2495401 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 45 |
| Conread position: | 51-442 |
| Cow position: | chr9:7005684-7006080 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-442 |
| Cow position: | chr9:28785285-28785681 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 42 |
| Conread position: | 51-442 |
| Cow position: | chr9:31810520-31810917 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 51-442 |
| Cow position: | chr9:44168532-44168930 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 40 |
| Conread position: | 51-442 |
| Cow position: | chr9:53776644-53777032 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 29 |
| Conread position: | 51-442 |
| Cow position: | chr9:54413664-54413270 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 8 |
| Conread position: | 52-289 |
| Cow position: | chr9:7844841-7844619 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 52-379 |
| Cow position: | chr9:14002981-14003306 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 39 |
| Conread position: | 52-442 |
| Cow position: | chr9:10856964-10857372 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 41 |
| Conread position: | 52-442 |
| Cow position: | chr9:42868925-42868532 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 41 |
| Conread position: | 53-442 |
| Cow position: | chr9:6365322-6365716 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 40 |
| Conread position: | 55-440 |
| Cow position: | chr9:10678978-10678592 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 37 |
| Conread position: | 55-442 |
| Cow position: | chr9:2856791-2857183 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 38 |
| Conread position: | 56-442 |
| Cow position: | chr9:5006921-5007305 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 46 |
| Conread position: | 58-407 |
| Cow position: | chr9:56862207-56861865 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 35 |
| Conread position: | 72-442 |
| Cow position: | chr9:34946050-34945674 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 21 |
| Conread position: | 95-442 |
| Cow position: | chr9:23421570-23421923 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 183, 293 |
| Conread position: | 101-442 |
| Cow position: | chr9:50326687-50327035 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 112 |
| Conread position: | 117-442 |
| Cow position: | chr9:30439404-30439734 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 79 |
| Conread position: | 118-440 |
| Cow position: | chr9:3411886-3411557 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 34 |
| Conread position: | 125-442 |
| Cow position: | chr9:18710507-18710831 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 203 |
| Conread position: | 135-441 |
| Cow position: | chr9:3933088-3932775 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 60 |
| Conread position: | 148-311 |
| Cow position: | chr9:30020473-30020636 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 127, 91 |
| Conread position: | 158-364 |
| Cow position: | chr9:25596699-25596913 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 117, 184 |
| Conread position: | 161-442 |
| Cow position: | chr9:2618747-2618445 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 165-442 |
| Cow position: | chr9:1259486-1259776 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 187-360 |
| Cow position: | chr9:24725676-24725852 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 132, 104 |
| Conread position: | 205-442 |
| Cow position: | chr9:26576795-26577033 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 109, 88 |
| Conread position: | 209-442 |
| Cow position: | chr9:46670029-46670267 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 147 |
Show alignments to all cow chromosomes.