Cow genome map
Conread name: | rspl32_c12.y1 |
Conread position: | 31-402 |
Cow position: | chrX:21818623-21818262 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 40 |
Conread position: | 31-442 |
Cow position: | chrX:2008870-2008455 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 67 |
Conread position: | 31-442 |
Cow position: | chrX:6656191-6655788 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 67 |
Conread position: | 31-442 |
Cow position: | chrX:29765826-29766248 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 65 |
Conread position: | 33-436 |
Cow position: | chrX:38228482-38228074 (view UCSC Genome Browser custom track) |
Alignm length: | 419 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 61 |
Conread position: | 50-440 |
Cow position: | chrX:16782136-16782526 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 231, 43 |
Conread position: | 50-442 |
Cow position: | chrX:24175098-24174705 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 38 |
Conread position: | 50-442 |
Cow position: | chrX:31495587-31495983 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 225, 39 |
Conread position: | 51-267 |
Cow position: | chrX:16045823-16046037 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 155 |
Alignm E-value: | 6e-32 |
Alignm gaps (pig, cow): | 81, 40 |
Conread position: | 51-267 |
Cow position: | chrX:29170930-29170717 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 165 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 51-363 |
Cow position: | chrX:20741704-20742022 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-403 |
Cow position: | chrX:5375425-5375068 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 42 |
Conread position: | 51-403 |
Cow position: | chrX:39713402-39713760 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-411 |
Cow position: | chrX:8640639-8641005 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-411 |
Cow position: | chrX:22564833-22564470 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 40 |
Conread position: | 51-414 |
Cow position: | chrX:9011182-9011551 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 40 |
Conread position: | 51-414 |
Cow position: | chrX:9169754-9169394 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 49 |
Conread position: | 51-414 |
Cow position: | chrX:11146483-11146113 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 40 |
Conread position: | 51-414 |
Cow position: | chrX:12359736-12360108 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 40 |
Conread position: | 51-414 |
Cow position: | chrX:15978100-15977733 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 40 |
Conread position: | 51-414 |
Cow position: | chrX:17782352-17782720 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 8 |
Conread position: | 51-414 |
Cow position: | chrX:21767651-21768024 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-414 |
Cow position: | chrX:27758560-27758928 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-435 |
Cow position: | chrX:2047964-2048353 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 8 |
Conread position: | 51-436 |
Cow position: | chrX:20999417-20999035 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 49 |
Conread position: | 51-441 |
Cow position: | chrX:28879729-28879347 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 42 |
Conread position: | 51-441 |
Cow position: | chrX:41847678-41847283 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 42 |
Conread position: | 51-442 |
Cow position: | chrX:672140-671746 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-442 |
Cow position: | chrX:3360673-3361068 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 232, 40 |
Conread position: | 51-442 |
Cow position: | chrX:4767550-4767938 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 42 |
Conread position: | 51-442 |
Cow position: | chrX:7551950-7551553 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 42 |
Conread position: | 51-442 |
Cow position: | chrX:10413123-10412727 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 42 |
Conread position: | 51-442 |
Cow position: | chrX:10867005-10866621 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-442 |
Cow position: | chrX:16360156-16359760 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-442 |
Cow position: | chrX:17054419-17054816 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-442 |
Cow position: | chrX:18656954-18656558 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-442 |
Cow position: | chrX:21389429-21389826 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 42 |
Conread position: | 51-442 |
Cow position: | chrX:21414718-21415115 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 42 |
Conread position: | 51-442 |
Cow position: | chrX:23022169-23022561 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 42 |
Conread position: | 51-442 |
Cow position: | chrX:23572966-23572568 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 19 |
Conread position: | 51-442 |
Cow position: | chrX:26530824-26531221 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 42 |
Conread position: | 51-442 |
Cow position: | chrX:27754279-27754676 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-442 |
Cow position: | chrX:31201692-31202089 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 42 |
Conread position: | 51-442 |
Cow position: | chrX:42732723-42733120 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 40 |
Conread position: | 51-443 |
Cow position: | chrX:16325673-16325278 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 42 |
Conread position: | 52-435 |
Cow position: | chrX:9899484-9899102 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 41 |
Conread position: | 52-442 |
Cow position: | chrX:4623101-4622706 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 39 |
Conread position: | 52-442 |
Cow position: | chrX:14782493-14782098 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 39 |
Conread position: | 52-442 |
Cow position: | chrX:28606237-28605848 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 269 |
Alignm E-value: | 7.00649e-44 |
Alignm gaps (pig, cow): | 133, 41 |
Conread position: | 53-435 |
Cow position: | chrX:23986103-23986491 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 89 |
Conread position: | 53-442 |
Cow position: | chrX:29099272-29099665 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 222, 40 |
Conread position: | 63-442 |
Cow position: | chrX:40693868-40693481 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 230, 30 |
Conread position: | 92-442 |
Cow position: | chrX:31261742-31261385 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 74 |
Conread position: | 101-442 |
Cow position: | chrX:39556890-39556547 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 195 |
Conread position: | 102-441 |
Cow position: | chrX:4481881-4482203 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 199, 22 |
Conread position: | 109-414 |
Cow position: | chrX:28503242-28503556 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 0 |
Conread position: | 128-443 |
Cow position: | chrX:35023995-35024309 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 9 |
Conread position: | 138-442 |
Cow position: | chrX:12345831-12346143 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 228 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 308 |
Conread position: | 149-414 |
Cow position: | chrX:39185119-39185393 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 126, 0 |
Conread position: | 150-426 |
Cow position: | chrX:25573300-25573585 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 201 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 124, 41 |
Conread position: | 157-416 |
Cow position: | chrX:29700987-29700721 (view UCSC Genome Browser custom track) |
Alignm length: | 269 |
Alignm identity: | 204 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 68 |
Conread position: | 161-358 |
Cow position: | chrX:21750284-21750081 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 144 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 131, 0 |
Conread position: | 161-442 |
Cow position: | chrX:2649392-2649102 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 217 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 248 |
Conread position: | 191-436 |
Cow position: | chrX:21626710-21626459 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 192 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 241 |
Conread position: | 201-442 |
Cow position: | chrX:12465036-12465280 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 175 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 201-442 |
Cow position: | chrX:30135344-30135099 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 177 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 75, 207 |
Conread position: | 207-442 |
Cow position: | chrX:10301135-10301376 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 192 |
Alignm E-value: | 5.99756e-43 |
Alignm gaps (pig, cow): | 83, 47 |
Conread position: | 209-442 |
Cow position: | chrX:37117915-37118158 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 180 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 58, 0 |
Conread position: | 210-442 |
Cow position: | chrX:22125848-22125607 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 182 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 67, 155 |
Conread position: | 215-414 |
Cow position: | chrX:38330396-38330602 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 149 |
Alignm E-value: | 3e-25 |
Alignm gaps (pig, cow): | 60, 165 |
Conread position: | 230-442 |
Cow position: | chrX:19877845-19878062 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 160 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 58, 121 |
Conread position: | 238-440 |
Cow position: | chrX:20790505-20790294 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 158 |
Alignm E-value: | 8e-34 |
Alignm gaps (pig, cow): | 40, 0 |
Show alignments to all cow chromosomes.