Cow genome map

Conread name: rspl32_c12.y1

Conread position: 31-402
Cow position: chrX:21818623-21818262 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 31-442
Cow position: chrX:2008870-2008455 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 67

Conread position: 31-442
Cow position: chrX:6656191-6655788 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 67

Conread position: 31-442
Cow position: chrX:29765826-29766248 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 65

Conread position: 33-436
Cow position: chrX:38228482-38228074 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 61

Conread position: 50-440
Cow position: chrX:16782136-16782526 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 43

Conread position: 50-442
Cow position: chrX:24175098-24174705 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 38

Conread position: 50-442
Cow position: chrX:31495587-31495983 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 39

Conread position: 51-267
Cow position: chrX:16045823-16046037 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 81, 40

Conread position: 51-267
Cow position: chrX:29170930-29170717 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 165
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 40, 0

Conread position: 51-363
Cow position: chrX:20741704-20742022 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-403
Cow position: chrX:5375425-5375068 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 42

Conread position: 51-403
Cow position: chrX:39713402-39713760 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-411
Cow position: chrX:8640639-8641005 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-411
Cow position: chrX:22564833-22564470 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 40

Conread position: 51-414
Cow position: chrX:9011182-9011551 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 40

Conread position: 51-414
Cow position: chrX:9169754-9169394 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 49

Conread position: 51-414
Cow position: chrX:11146483-11146113 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 40

Conread position: 51-414
Cow position: chrX:12359736-12360108 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 40

Conread position: 51-414
Cow position: chrX:15978100-15977733 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 40

Conread position: 51-414
Cow position: chrX:17782352-17782720 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 8

Conread position: 51-414
Cow position: chrX:21767651-21768024 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-414
Cow position: chrX:27758560-27758928 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-435
Cow position: chrX:2047964-2048353 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 8

Conread position: 51-436
Cow position: chrX:20999417-20999035 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 49

Conread position: 51-441
Cow position: chrX:28879729-28879347 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 51-441
Cow position: chrX:41847678-41847283 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 42

Conread position: 51-442
Cow position: chrX:672140-671746 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-442
Cow position: chrX:3360673-3361068 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 40

Conread position: 51-442
Cow position: chrX:4767550-4767938 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 51-442
Cow position: chrX:7551950-7551553 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 51-442
Cow position: chrX:10413123-10412727 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 42

Conread position: 51-442
Cow position: chrX:10867005-10866621 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-442
Cow position: chrX:16360156-16359760 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-442
Cow position: chrX:17054419-17054816 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-442
Cow position: chrX:18656954-18656558 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-442
Cow position: chrX:21389429-21389826 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 51-442
Cow position: chrX:21414718-21415115 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 51-442
Cow position: chrX:23022169-23022561 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 51-442
Cow position: chrX:23572966-23572568 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 19

Conread position: 51-442
Cow position: chrX:26530824-26531221 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 51-442
Cow position: chrX:27754279-27754676 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-442
Cow position: chrX:31201692-31202089 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 42

Conread position: 51-442
Cow position: chrX:42732723-42733120 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 40

Conread position: 51-443
Cow position: chrX:16325673-16325278 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 42

Conread position: 52-435
Cow position: chrX:9899484-9899102 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 41

Conread position: 52-442
Cow position: chrX:4623101-4622706 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 39

Conread position: 52-442
Cow position: chrX:14782493-14782098 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 39

Conread position: 52-442
Cow position: chrX:28606237-28605848 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 269
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 133, 41

Conread position: 53-435
Cow position: chrX:23986103-23986491 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 89

Conread position: 53-442
Cow position: chrX:29099272-29099665 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 40

Conread position: 63-442
Cow position: chrX:40693868-40693481 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 30

Conread position: 92-442
Cow position: chrX:31261742-31261385 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 74

Conread position: 101-442
Cow position: chrX:39556890-39556547 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 195

Conread position: 102-441
Cow position: chrX:4481881-4482203 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 22

Conread position: 109-414
Cow position: chrX:28503242-28503556 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 128-443
Cow position: chrX:35023995-35024309 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 9

Conread position: 138-442
Cow position: chrX:12345831-12346143 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 308

Conread position: 149-414
Cow position: chrX:39185119-39185393 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 150-426
Cow position: chrX:25573300-25573585 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 124, 41

Conread position: 157-416
Cow position: chrX:29700987-29700721 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 68

Conread position: 161-358
Cow position: chrX:21750284-21750081 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 131, 0

Conread position: 161-442
Cow position: chrX:2649392-2649102 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 248

Conread position: 191-436
Cow position: chrX:21626710-21626459 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 241

Conread position: 201-442
Cow position: chrX:12465036-12465280 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 74, 0

Conread position: 201-442
Cow position: chrX:30135344-30135099 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 75, 207

Conread position: 207-442
Cow position: chrX:10301135-10301376 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 83, 47

Conread position: 209-442
Cow position: chrX:37117915-37118158 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 58, 0

Conread position: 210-442
Cow position: chrX:22125848-22125607 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 67, 155

Conread position: 215-414
Cow position: chrX:38330396-38330602 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 165

Conread position: 230-442
Cow position: chrX:19877845-19878062 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 121

Conread position: 238-440
Cow position: chrX:20790505-20790294 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 40, 0

Show alignments to all cow chromosomes.