Cow genome map

Conread name: rsug05_n17.y1

Conread position: 1-174
Cow position: chr1:31795003-31794832 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 124
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 1-174
Cow position: chr1:49334390-49334215 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 34, 133

Conread position: 1-174
Cow position: chr1:57089677-57089504 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 82

Conread position: 1-195
Cow position: chr1:71078958-71078764 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 15, 107

Conread position: 1-202
Cow position: chr1:87197822-87198022 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 15, 126

Conread position: 1-202
Cow position: chr1:89381277-89381478 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 14, 126

Conread position: 1-207
Cow position: chr1:6790777-6790988 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 179, 56

Conread position: 1-208
Cow position: chr1:74084186-74083983 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 1-210
Cow position: chr1:6731182-6731397 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 30, 123

Conread position: 1-210
Cow position: chr1:36688376-36688162 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 15, 94

Conread position: 1-212
Cow position: chr1:5751315-5751536 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 162
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 25, 145

Conread position: 1-215
Cow position: chr1:32014200-32014403 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 121, 0

Conread position: 1-215
Cow position: chr1:65318577-65318789 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 152
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 30, 99

Conread position: 1-222
Cow position: chr1:484465-484244 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 27, 174

Conread position: 1-222
Cow position: chr1:72034922-72034703 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 111

Conread position: 1-222
Cow position: chr1:84104059-84103836 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 147
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 1-222
Cow position: chr1:95152873-95153095 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 213

Conread position: 1-238
Cow position: chr1:90267723-90267956 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 161
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 13, 176

Conread position: 1-247
Cow position: chr1:38706852-38706598 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 179
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 30, 111

Conread position: 1-249
Cow position: chr1:97231962-97232229 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 185
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 212

Conread position: 2-208
Cow position: chr1:61741964-61741748 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 50, 30

Conread position: 2-248
Cow position: chr1:96019233-96019486 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 164, 0

Conread position: 3-202
Cow position: chr1:3965840-3966039 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 177, 29

Conread position: 7-174
Cow position: chr1:60044996-60045161 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 8-166
Cow position: chr1:76613124-76612966 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 94, 90

Conread position: 8-174
Cow position: chr1:96558838-96558672 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 8-206
Cow position: chr1:81638559-81638745 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 8-210
Cow position: chr1:19515608-19515410 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 109, 151

Conread position: 8-213
Cow position: chr1:22823916-22824119 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 124, 168

Conread position: 8-213
Cow position: chr1:72422397-72422196 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 0

Conread position: 8-213
Cow position: chr1:87095203-87095000 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 186, 167

Conread position: 8-220
Cow position: chr1:50432473-50432252 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 149
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 173, 0

Conread position: 8-222
Cow position: chr1:55428946-55428726 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 8-231
Cow position: chr1:85818262-85818481 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 168, 123

Conread position: 8-249
Cow position: chr1:48581140-48581372 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 10-166
Cow position: chr1:65030080-65030236 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 10-172
Cow position: chr1:40181612-40181449 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 13-159
Cow position: chr1:874670-874816 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-174
Cow position: chr1:49082759-49082920 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 114
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 13-208
Cow position: chr1:40303567-40303753 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 13-213
Cow position: chr1:73020646-73020441 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 167, 0

Conread position: 13-225
Cow position: chr1:84594904-84595116 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 13-243
Cow position: chr1:38419039-38419269 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 158
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 112, 216

Conread position: 14-174
Cow position: chr1:54258584-54258743 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 54, 0

Conread position: 14-213
Cow position: chr1:81481365-81481173 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 188, 108

Conread position: 14-220
Cow position: chr1:93590569-93590361 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 148
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 162, 111

Conread position: 14-222
Cow position: chr1:61005545-61005339 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 84, 40

Conread position: 14-228
Cow position: chr1:45315619-45315406 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 111, 163

Conread position: 21-160
Cow position: chr1:31630263-31630123 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 21-173
Cow position: chr1:61134436-61134588 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 21-174
Cow position: chr1:23633906-23633753 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 21-197
Cow position: chr1:63460902-63461083 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 145, 97

Conread position: 21-210
Cow position: chr1:55230000-55230191 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 145, 104

Conread position: 21-213
Cow position: chr1:48301427-48301229 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 146, 110

Conread position: 21-214
Cow position: chr1:5010812-5010611 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 158, 0

Conread position: 21-222
Cow position: chr1:53402805-53403008 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 159, 181

Conread position: 22-208
Cow position: chr1:42175752-42175945 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 70

Conread position: 23-210
Cow position: chr1:5284206-5284008 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 23-212
Cow position: chr1:627992-628182 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 157, 87

Conread position: 23-227
Cow position: chr1:872089-871880 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 24-213
Cow position: chr1:52384935-52385133 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 102, 0

Conread position: 34-221
Cow position: chr1:41953965-41953780 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 171, 134

Conread position: 36-207
Cow position: chr1:77685942-77685763 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 140, 0

Conread position: 37-174
Cow position: chr1:23372899-23373035 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 37-178
Cow position: chr1:38277988-38277848 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 37-201
Cow position: chr1:1802207-1802374 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 143, 0

Conread position: 37-208
Cow position: chr1:94823352-94823184 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 140, 0

Conread position: 37-210
Cow position: chr1:43352616-43352446 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 138, 0

Conread position: 37-212
Cow position: chr1:53370123-53370305 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 0

Conread position: 37-217
Cow position: chr1:70422344-70422527 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 141, 0

Conread position: 37-221
Cow position: chr1:76518462-76518642 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 181, 139

Conread position: 37-222
Cow position: chr1:9637069-9637252 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 37-224
Cow position: chr1:3666991-3666801 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 141, 0

Conread position: 37-234
Cow position: chr1:731933-731740 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 89, 142

Conread position: 38-159
Cow position: chr1:72813657-72813778 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 38-166
Cow position: chr1:34856587-34856459 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 38-166
Cow position: chr1:47886439-47886314 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 38-174
Cow position: chr1:79170112-79169976 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 38-174
Cow position: chr1:95835757-95835621 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 38-208
Cow position: chr1:100852750-100852919 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 142, 84

Conread position: 38-209
Cow position: chr1:98557078-98556912 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 61, 69

Conread position: 38-210
Cow position: chr1:72068794-72068616 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 38-213
Cow position: chr1:70483293-70483121 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 171, 87

Conread position: 38-215
Cow position: chr1:1380038-1380216 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 129, 0

Conread position: 38-215
Cow position: chr1:71664856-71664682 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 137, 0

Conread position: 38-215
Cow position: chr1:79178669-79178846 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 38-228
Cow position: chr1:75250151-75250349 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 135, 0

Conread position: 39-197
Cow position: chr1:88926340-88926182 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 39-205
Cow position: chr1:85622571-85622745 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 140, 0

Conread position: 39-208
Cow position: chr1:86113358-86113185 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 77, 0

Conread position: 39-209
Cow position: chr1:72092581-72092417 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 39-215
Cow position: chr1:12222565-12222381 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 127, 0

Conread position: 39-215
Cow position: chr1:74929669-74929496 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 136, 0

Conread position: 39-224
Cow position: chr1:34731086-34731270 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 128
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 156, 0

Conread position: 39-225
Cow position: chr1:73545869-73545678 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 140, 179

Conread position: 39-242
Cow position: chr1:35671581-35671777 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 141, 92

Conread position: 39-243
Cow position: chr1:21955331-21955133 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 39-256
Cow position: chr1:49024331-49024548 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 145
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 161

Conread position: 43-199
Cow position: chr1:98467845-98467998 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 118, 6

Conread position: 43-207
Cow position: chr1:79718853-79719023 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 129
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 59, 25

Conread position: 44-158
Cow position: chr1:67539606-67539720 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-158
Cow position: chr1:100823084-100823198 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 44-160
Cow position: chr1:81364307-81364423 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-173
Cow position: chr1:26984056-26984185 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 97
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-174
Cow position: chr1:19599314-19599186 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 44-178
Cow position: chr1:90879689-90879562 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 44-178
Cow position: chr1:98380250-98380117 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 44-204
Cow position: chr1:18764574-18764413 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 136, 43

Conread position: 44-208
Cow position: chr1:100512942-100513113 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 123, 49

Conread position: 44-209
Cow position: chr1:102797951-102797782 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 136, 0

Conread position: 44-210
Cow position: chr1:36018736-36018566 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 121, 0

Conread position: 44-213
Cow position: chr1:100474281-100474449 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 58

Conread position: 44-215
Cow position: chr1:30028185-30028019 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 161, 73

Conread position: 44-219
Cow position: chr1:31607842-31607663 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 154, 0

Conread position: 44-220
Cow position: chr1:20871512-20871339 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 128, 0

Conread position: 44-222
Cow position: chr1:42796924-42797101 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 44-224
Cow position: chr1:1496485-1496308 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 67, 133

Conread position: 44-241
Cow position: chr1:99637207-99637013 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 131, 0

Conread position: 45-158
Cow position: chr1:69411649-69411536 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 45-166
Cow position: chr1:70146863-70146742 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 45-174
Cow position: chr1:49433216-49433087 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 45-175
Cow position: chr1:11489111-11488981 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 45-209
Cow position: chr1:47658393-47658565 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 121, 0

Conread position: 45-223
Cow position: chr1:64804054-64803863 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 46-216
Cow position: chr1:81515282-81515464 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 46-222
Cow position: chr1:102768226-102768395 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 158, 76

Conread position: 46-228
Cow position: chr1:33720150-33720330 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 159, 129

Conread position: 47-221
Cow position: chr1:4294394-4294565 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 48-214
Cow position: chr1:60403817-60403992 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 48-222
Cow position: chr1:7748264-7748444 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 89, 159

Conread position: 48-222
Cow position: chr1:7752430-7752608 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 118, 157

Conread position: 51-207
Cow position: chr1:90192470-90192636 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 51-210
Cow position: chr1:95994216-95994051 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 115, 0

Conread position: 51-213
Cow position: chr1:81611373-81611537 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 79

Conread position: 53-256
Cow position: chr1:62469116-62469310 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 171, 65

Conread position: 54-174
Cow position: chr1:73398017-73397897 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 56-211
Cow position: chr1:83246484-83246647 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 124, 0

Conread position: 61-173
Cow position: chr1:64705963-64706075 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 204-475
Cow position: chr1:56489854-56490130 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 145, 40

Conread position: 218-475
Cow position: chr1:40684663-40684401 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 182
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 120, 26

Show alignments to all cow chromosomes.