Cow genome map

Conread name: rsug05_n17.y1

Conread position: 1-178
Cow position: chr10:5151319-5151500 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 58

Conread position: 1-210
Cow position: chr10:11463692-11463472 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 111, 0

Conread position: 1-210
Cow position: chr10:48316974-48316767 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 32, 172

Conread position: 1-212
Cow position: chr10:45379032-45378817 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 128

Conread position: 1-213
Cow position: chr10:34646474-34646266 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 22, 111

Conread position: 1-222
Cow position: chr10:6489844-6490067 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 24, 179

Conread position: 1-222
Cow position: chr10:10027547-10027763 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 116, 30

Conread position: 1-222
Cow position: chr10:49846747-49846976 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 21, 0

Conread position: 1-222
Cow position: chr10:66365267-66365504 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 168
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 1-229
Cow position: chr10:23379106-23379338 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 151
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 2-215
Cow position: chr10:61509970-61509766 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 112

Conread position: 3-170
Cow position: chr10:51727445-51727286 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 3-173
Cow position: chr10:54776520-54776692 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 5-214
Cow position: chr10:28843335-28843541 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 94

Conread position: 7-214
Cow position: chr10:10152990-10153186 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 7-222
Cow position: chr10:6718954-6719166 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 168, 0

Conread position: 8-144
Cow position: chr10:39140301-39140436 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 8-173
Cow position: chr10:42745899-42746055 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 8-174
Cow position: chr10:41132246-41132406 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 8-209
Cow position: chr10:16830405-16830197 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 147
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 172, 110

Conread position: 8-210
Cow position: chr10:16986313-16986512 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 158, 165

Conread position: 8-210
Cow position: chr10:48377416-48377212 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 172, 41

Conread position: 13-207
Cow position: chr10:33195028-33195219 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 167, 0

Conread position: 13-221
Cow position: chr10:15868238-15868446 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 141
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 13-222
Cow position: chr10:16598675-16598884 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 191, 97

Conread position: 13-222
Cow position: chr10:16645200-16644995 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 0

Conread position: 14-174
Cow position: chr10:49923386-49923222 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 14-213
Cow position: chr10:14188623-14188424 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 143
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 162, 68

Conread position: 14-217
Cow position: chr10:46327678-46327874 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 14-220
Cow position: chr10:46042981-46043187 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 141
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 171, 59

Conread position: 16-173
Cow position: chr10:9576059-9575906 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 21-177
Cow position: chr10:46934787-46934631 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-209
Cow position: chr10:23127992-23127805 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 133
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 113, 132

Conread position: 21-209
Cow position: chr10:36856137-36855940 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 77, 0

Conread position: 21-210
Cow position: chr10:19503289-19503092 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 79, 119

Conread position: 21-222
Cow position: chr10:47159209-47159406 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 139
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 145, 98

Conread position: 22-168
Cow position: chr10:37014629-37014775 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 24-222
Cow position: chr10:4330000-4329803 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 106, 94

Conread position: 28-213
Cow position: chr10:15602180-15601987 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 148, 0

Conread position: 34-220
Cow position: chr10:35486431-35486245 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 130, 140

Conread position: 37-160
Cow position: chr10:13197821-13197694 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 65, 61

Conread position: 37-166
Cow position: chr10:61982396-61982526 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 37-174
Cow position: chr10:55122817-55122953 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 37-206
Cow position: chr10:58149159-58148991 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 143, 85

Conread position: 37-212
Cow position: chr10:37971779-37971953 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 129, 82

Conread position: 37-214
Cow position: chr10:7309442-7309262 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 129, 0

Conread position: 37-230
Cow position: chr10:43487724-43487915 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 37-245
Cow position: chr10:8870825-8871039 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 139, 168

Conread position: 38-170
Cow position: chr10:54848789-54848917 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 57

Conread position: 38-203
Cow position: chr10:31803470-31803308 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 142, 71

Conread position: 38-207
Cow position: chr10:37295661-37295501 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 38-213
Cow position: chr10:9959227-9959398 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 38-213
Cow position: chr10:55382326-55382507 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 128, 107

Conread position: 38-214
Cow position: chr10:9797899-9797720 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 128, 80

Conread position: 38-221
Cow position: chr10:53766353-53766534 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 177, 137

Conread position: 38-222
Cow position: chr10:4184207-4184399 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 38-222
Cow position: chr10:38995240-38995424 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 97

Conread position: 39-180
Cow position: chr10:36401073-36400933 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 39-203
Cow position: chr10:34603632-34603463 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 39-208
Cow position: chr10:22593934-22594100 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 39-210
Cow position: chr10:69934768-69934595 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 133, 83

Conread position: 39-211
Cow position: chr10:15249030-15248850 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 39-213
Cow position: chr10:51873471-51873290 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 132, 0

Conread position: 39-214
Cow position: chr10:15817781-15817605 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 137, 27

Conread position: 39-215
Cow position: chr10:27178505-27178673 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 39-221
Cow position: chr10:58414560-58414369 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 127, 0

Conread position: 40-214
Cow position: chr10:8161517-8161697 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 65, 47

Conread position: 43-210
Cow position: chr10:19709394-19709572 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 43-212
Cow position: chr10:28571415-28571582 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 162, 132

Conread position: 44-174
Cow position: chr10:47182551-47182422 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 44-205
Cow position: chr10:15383344-15383508 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 136, 0

Conread position: 44-217
Cow position: chr10:45871532-45871710 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 136, 0

Conread position: 44-219
Cow position: chr10:34705294-34705476 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 122, 75

Conread position: 44-221
Cow position: chr10:52881601-52881425 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 101, 156

Conread position: 44-222
Cow position: chr10:28223231-28223405 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 44-222
Cow position: chr10:40998874-40999048 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 82

Conread position: 44-225
Cow position: chr10:61588243-61588065 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 118, 126

Conread position: 45-210
Cow position: chr10:22972987-22972827 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 45-213
Cow position: chr10:40933776-40933954 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 45-222
Cow position: chr10:52152813-52152987 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 119, 112

Conread position: 46-166
Cow position: chr10:42123573-42123453 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 92
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 46-216
Cow position: chr10:47670585-47670751 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 149, 130

Conread position: 46-227
Cow position: chr10:45476203-45476021 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 151, 0

Conread position: 46-235
Cow position: chr10:44730459-44730260 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 163

Conread position: 46-247
Cow position: chr10:48814408-48814200 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 128, 65

Conread position: 46-466
Cow position: chr10:7304585-7305012 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 277
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 122, 79

Conread position: 47-209
Cow position: chr10:38799858-38800027 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 133, 0

Conread position: 47-213
Cow position: chr10:22390617-22390776 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 47-237
Cow position: chr10:45371076-45371260 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 48-207
Cow position: chr10:6964396-6964229 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 118, 0

Conread position: 48-211
Cow position: chr10:62454348-62454182 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 121

Conread position: 48-212
Cow position: chr10:41626616-41626782 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 118, 23

Conread position: 51-202
Cow position: chr10:282230-282378 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 117, 71

Conread position: 51-213
Cow position: chr10:13350185-13350016 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 62, 0

Conread position: 51-221
Cow position: chr10:65681687-65681510 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 129, 156

Conread position: 51-248
Cow position: chr10:16417575-16417384 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 68

Conread position: 52-209
Cow position: chr10:50332620-50332780 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 122, 45

Conread position: 54-206
Cow position: chr10:5108828-5108668 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 112, 0

Conread position: 57-222
Cow position: chr10:7291780-7291615 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 191-469
Cow position: chr10:25565233-25564950 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 189
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 155, 21

Conread position: 193-474
Cow position: chr10:55024228-55024500 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 54, 41

Conread position: 200-472
Cow position: chr10:51952586-51952311 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 45

Show alignments to all cow chromosomes.