Cow genome map

Conread name: rsug05_n17.y1

Conread position: 1-148
Cow position: chr11:76835646-76835497 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 1-153
Cow position: chr11:35926926-35926777 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 1-171
Cow position: chr11:13592714-13592889 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 1-174
Cow position: chr11:35109559-35109385 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 86

Conread position: 1-209
Cow position: chr11:6233901-6233694 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 20, 175

Conread position: 1-210
Cow position: chr11:19592014-19591800 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 179, 0

Conread position: 1-213
Cow position: chr11:30830635-30830420 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 100

Conread position: 1-213
Cow position: chr11:45742356-45742567 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 165, 30

Conread position: 1-214
Cow position: chr11:13499996-13500211 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 166, 110

Conread position: 1-222
Cow position: chr11:45350533-45350309 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 149
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 1-243
Cow position: chr11:69168564-69168809 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 161
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 10, 214

Conread position: 2-166
Cow position: chr11:3714805-3714966 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 3-213
Cow position: chr11:67614941-67614737 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 13, 117

Conread position: 4-214
Cow position: chr11:42016657-42016439 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 7-174
Cow position: chr11:84385652-84385485 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 7-208
Cow position: chr11:30708491-30708688 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 25, 67

Conread position: 7-213
Cow position: chr11:35723955-35724163 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 189, 0

Conread position: 8-166
Cow position: chr11:63435509-63435666 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 8-209
Cow position: chr11:26144108-26143904 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 168, 0

Conread position: 8-209
Cow position: chr11:86895364-86895556 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 116, 0

Conread position: 8-213
Cow position: chr11:13067678-13067474 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 143
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 112, 128

Conread position: 8-213
Cow position: chr11:13162326-13162530 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 128

Conread position: 8-213
Cow position: chr11:43914279-43914481 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 167, 0

Conread position: 8-214
Cow position: chr11:42835960-42835752 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 160, 13

Conread position: 8-219
Cow position: chr11:53773669-53773892 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 152
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 172, 0

Conread position: 8-225
Cow position: chr11:25783700-25783910 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 157, 0

Conread position: 8-240
Cow position: chr11:42084688-42084462 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 129, 169

Conread position: 13-174
Cow position: chr11:18509038-18508877 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 13-213
Cow position: chr11:46884366-46884567 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 136
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 183, 0

Conread position: 13-213
Cow position: chr11:49396533-49396327 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 163, 128

Conread position: 13-223
Cow position: chr11:32254224-32254003 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 167, 108

Conread position: 14-205
Cow position: chr11:21885827-21886020 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 162, 47

Conread position: 14-222
Cow position: chr11:44032005-44032203 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 18-221
Cow position: chr11:25968855-25968654 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 137
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 20-174
Cow position: chr11:81406169-81406015 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 39, 90

Conread position: 20-208
Cow position: chr11:5486013-5486199 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 146, 92

Conread position: 20-213
Cow position: chr11:76890045-76890243 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 156, 0

Conread position: 20-215
Cow position: chr11:18924745-18924937 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 87

Conread position: 21-158
Cow position: chr11:29786498-29786357 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 0

Conread position: 21-160
Cow position: chr11:2835859-2835998 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 21-173
Cow position: chr11:60720455-60720303 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 21-174
Cow position: chr11:17517399-17517554 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 21-206
Cow position: chr11:8437693-8437504 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 90, 173

Conread position: 21-207
Cow position: chr11:8545018-8544834 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 155

Conread position: 21-222
Cow position: chr11:16314873-16315074 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-222
Cow position: chr11:63999091-63998894 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 155, 0

Conread position: 22-208
Cow position: chr11:41278187-41278381 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 158, 0

Conread position: 22-213
Cow position: chr11:44619956-44620152 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 154, 0

Conread position: 23-170
Cow position: chr11:30192181-30192329 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 24-174
Cow position: chr11:34778440-34778290 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 28-174
Cow position: chr11:8670018-8670169 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 37-174
Cow position: chr11:37435971-37435835 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 37-214
Cow position: chr11:12555289-12555104 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 143, 0

Conread position: 37-221
Cow position: chr11:36847184-36847365 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 138, 0

Conread position: 38-174
Cow position: chr11:62812932-62812800 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 38-179
Cow position: chr11:34136258-34136398 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 104, 0

Conread position: 38-208
Cow position: chr11:15772696-15772530 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 38-213
Cow position: chr11:26057633-26057459 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 80, 139

Conread position: 38-214
Cow position: chr11:62620394-62620575 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 142, 87

Conread position: 38-220
Cow position: chr11:63165629-63165456 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 38-225
Cow position: chr11:63475655-63475471 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 130, 0

Conread position: 39-208
Cow position: chr11:3715258-3715433 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 39-208
Cow position: chr11:41281063-41281232 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-208
Cow position: chr11:70600810-70600633 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 141, 0

Conread position: 39-210
Cow position: chr11:79548919-79548748 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 123, 90

Conread position: 39-215
Cow position: chr11:81175615-81175788 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 80

Conread position: 39-221
Cow position: chr11:68570362-68570175 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 111, 79

Conread position: 40-242
Cow position: chr11:17553061-17552860 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 72, 56

Conread position: 44-166
Cow position: chr11:13864081-13863958 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 44-174
Cow position: chr11:6320109-6319979 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-174
Cow position: chr11:62889870-62889740 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 44-178
Cow position: chr11:43641410-43641544 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 44-197
Cow position: chr11:36300558-36300401 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 132, 66

Conread position: 44-205
Cow position: chr11:38236275-38236436 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 136, 114

Conread position: 44-207
Cow position: chr11:35213144-35212978 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 122, 80

Conread position: 44-210
Cow position: chr11:4411845-4411688 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 44-210
Cow position: chr11:44176619-44176787 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 121, 78

Conread position: 44-211
Cow position: chr11:1980244-1980068 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 44-211
Cow position: chr11:71868579-71868413 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 137, 98

Conread position: 44-215
Cow position: chr11:46010230-46010057 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 123, 0

Conread position: 44-222
Cow position: chr11:3896677-3896502 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 66, 132

Conread position: 44-222
Cow position: chr11:42066888-42067061 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 66, 0

Conread position: 44-226
Cow position: chr11:26442481-26442301 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 178, 137

Conread position: 44-234
Cow position: chr11:81614490-81614307 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 119

Conread position: 44-239
Cow position: chr11:33369174-33369372 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 136, 0

Conread position: 44-255
Cow position: chr11:76248073-76248290 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 139, 62

Conread position: 46-166
Cow position: chr11:46747835-46747715 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 46-210
Cow position: chr11:5559307-5559479 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 119, 0

Conread position: 46-211
Cow position: chr11:4363888-4363720 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 134, 81

Conread position: 46-214
Cow position: chr11:37100147-37099971 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 120, 64

Conread position: 48-213
Cow position: chr11:66939565-66939392 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 132, 0

Conread position: 51-213
Cow position: chr11:44859256-44859096 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 145, 71

Conread position: 51-222
Cow position: chr11:20117105-20117274 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 51-227
Cow position: chr11:44016274-44016447 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 128, 0

Conread position: 51-242
Cow position: chr11:73977270-73977079 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 99, 75

Conread position: 218-441
Cow position: chr11:63659892-63659663 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 154
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 133, 26

Show alignments to all cow chromosomes.