Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-158 |
| Cow position: | chr12:7457585-7457427 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 1-174 |
| Cow position: | chr12:26147212-26147038 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 1-212 |
| Cow position: | chr12:26357411-26357193 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 119, 201 |
| Conread position: | 1-218 |
| Cow position: | chr12:18518631-18518845 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 15, 130 |
| Conread position: | 1-222 |
| Cow position: | chr12:36261647-36261869 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 23, 178 |
| Conread position: | 1-239 |
| Cow position: | chr12:43974251-43974482 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 7-222 |
| Cow position: | chr12:35241139-35240929 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 8-174 |
| Cow position: | chr12:16386490-16386325 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 8-222 |
| Cow position: | chr12:37123616-37123830 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 103 |
| Conread position: | 8-222 |
| Cow position: | chr12:42602276-42602062 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 109, 170 |
| Conread position: | 13-173 |
| Cow position: | chr12:11587746-11587900 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 14-222 |
| Cow position: | chr12:39150079-39149871 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 18, 24 |
| Conread position: | 20-208 |
| Cow position: | chr12:11230212-11230401 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 170 |
| Conread position: | 20-225 |
| Cow position: | chr12:31530275-31530487 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 21-173 |
| Cow position: | chr12:30661970-30661820 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 21-222 |
| Cow position: | chr12:21780142-21780341 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 180, 97 |
| Conread position: | 21-245 |
| Cow position: | chr12:27563397-27563172 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 155, 96 |
| Conread position: | 22-212 |
| Cow position: | chr12:28131570-28131767 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 36-166 |
| Cow position: | chr12:42254662-42254791 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 37-166 |
| Cow position: | chr12:30042721-30042850 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-174 |
| Cow position: | chr12:29675146-29675009 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-201 |
| Cow position: | chr12:11106585-11106422 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 37-213 |
| Cow position: | chr12:26749956-26749774 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 131, 169 |
| Conread position: | 37-221 |
| Cow position: | chr12:22323278-22323090 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 37-225 |
| Cow position: | chr12:12699645-12699445 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 38-174 |
| Cow position: | chr12:15122323-15122455 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 38-213 |
| Cow position: | chr12:43854890-43855056 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 38-259 |
| Cow position: | chr12:16670264-16670491 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 61, 54 |
| Conread position: | 39-158 |
| Cow position: | chr12:42966993-42967109 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 39-178 |
| Cow position: | chr12:9514359-9514502 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 39-209 |
| Cow position: | chr12:27176638-27176811 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 39-209 |
| Cow position: | chr12:27192366-27192193 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 44-173 |
| Cow position: | chr12:43619283-43619413 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 44-201 |
| Cow position: | chr12:10895550-10895389 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 44-209 |
| Cow position: | chr12:26868811-26868641 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 44-215 |
| Cow position: | chr12:20356806-20356631 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 44-222 |
| Cow position: | chr12:9482302-9482127 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 67, 43 |
| Conread position: | 44-259 |
| Cow position: | chr12:15103277-15103489 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 143, 124 |
| Conread position: | 45-206 |
| Cow position: | chr12:15050619-15050455 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 45 |
| Conread position: | 45-211 |
| Cow position: | chr12:41159591-41159758 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 119, 135 |
| Conread position: | 45-247 |
| Cow position: | chr12:38774239-38774033 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 135, 64 |
| Conread position: | 46-222 |
| Cow position: | chr12:1089388-1089215 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 33, 11 |
| Conread position: | 46-222 |
| Cow position: | chr12:14396780-14396616 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 46-229 |
| Cow position: | chr12:22047926-22048106 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 47-174 |
| Cow position: | chr12:3057093-3057219 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 51-224 |
| Cow position: | chr12:7884671-7884503 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 51-246 |
| Cow position: | chr12:13995788-13995585 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 99, 185 |
| Conread position: | 54-222 |
| Cow position: | chr12:27663980-27663815 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 59-222 |
| Cow position: | chr12:39738281-39738122 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.