Cow genome map

Conread name: rsug05_n17.y1

Conread position: 1-201
Cow position: chr13:37592957-37593163 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 150
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 1-210
Cow position: chr13:42200608-42200405 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 24, 126

Conread position: 1-222
Cow position: chr13:15041483-15041702 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 113

Conread position: 2-210
Cow position: chr13:15257381-15257593 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 52

Conread position: 2-213
Cow position: chr13:32283115-32282898 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 204

Conread position: 8-173
Cow position: chr13:10924941-10925104 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 8-213
Cow position: chr13:52055612-52055813 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 197, 123

Conread position: 8-222
Cow position: chr13:32017532-32017745 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 145
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 197, 167

Conread position: 8-237
Cow position: chr13:11147037-11146798 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 166, 0

Conread position: 13-212
Cow position: chr13:40491190-40491000 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 85, 113

Conread position: 13-227
Cow position: chr13:10220938-10220720 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 18, 191

Conread position: 13-238
Cow position: chr13:51695943-51695712 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 15

Conread position: 13-242
Cow position: chr13:20367904-20368129 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 159, 0

Conread position: 14-209
Cow position: chr13:55674234-55674424 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 134
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 106, 0

Conread position: 14-220
Cow position: chr13:33854710-33854918 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 162, 111

Conread position: 18-215
Cow position: chr13:37614226-37614417 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 21-166
Cow position: chr13:17716547-17716692 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 21-178
Cow position: chr13:49476045-49475885 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 90, 0

Conread position: 21-207
Cow position: chr13:21275826-21275633 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 138, 0

Conread position: 21-209
Cow position: chr13:14645019-14644839 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 105

Conread position: 21-210
Cow position: chr13:14063554-14063737 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 181, 88

Conread position: 21-210
Cow position: chr13:25520948-25521139 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 104, 159

Conread position: 21-210
Cow position: chr13:34873556-34873358 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 153, 0

Conread position: 21-243
Cow position: chr13:12449021-12449238 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 149
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 21-243
Cow position: chr13:21280530-21280745 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 149
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 154, 0

Conread position: 22-245
Cow position: chr13:3153716-3153496 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 183, 88

Conread position: 23-226
Cow position: chr13:49392984-49393194 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 153, 0

Conread position: 23-255
Cow position: chr13:584905-585132 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 158
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 149, 0

Conread position: 34-210
Cow position: chr13:16163536-16163368 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 141, 87

Conread position: 37-173
Cow position: chr13:18999486-18999350 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 37-174
Cow position: chr13:24155465-24155328 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 65, 60

Conread position: 37-178
Cow position: chr13:8667570-8667429 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 114
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 37-195
Cow position: chr13:46298805-46298965 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 75, 88

Conread position: 37-206
Cow position: chr13:14544086-14543913 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 123, 130

Conread position: 37-210
Cow position: chr13:60509169-60509340 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 143, 0

Conread position: 37-213
Cow position: chr13:6113575-6113750 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 101, 140

Conread position: 37-218
Cow position: chr13:20271274-20271467 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 46, 26

Conread position: 37-222
Cow position: chr13:17975012-17975189 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 61, 70

Conread position: 37-225
Cow position: chr13:17822999-17823183 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 38-160
Cow position: chr13:8637648-8637526 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 38-174
Cow position: chr13:1339191-1339327 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 38-174
Cow position: chr13:16908167-16908031 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 100
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 38-208
Cow position: chr13:21171622-21171796 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 112, 0

Conread position: 38-209
Cow position: chr13:13320747-13320577 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 142, 84

Conread position: 38-213
Cow position: chr13:37069295-37069115 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 129, 0

Conread position: 38-222
Cow position: chr13:11103249-11103435 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 146

Conread position: 39-170
Cow position: chr13:16834581-16834715 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 63, 59

Conread position: 39-174
Cow position: chr13:21127388-21127524 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 72, 0

Conread position: 39-200
Cow position: chr13:4790169-4790339 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 39-210
Cow position: chr13:21866684-21866859 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 127, 67

Conread position: 39-212
Cow position: chr13:15872390-15872208 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 140, 0

Conread position: 39-218
Cow position: chr13:46391304-46391121 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 126, 0

Conread position: 39-221
Cow position: chr13:23805068-23805248 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 126
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 141, 0

Conread position: 39-225
Cow position: chr13:53357782-53357583 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 141, 0

Conread position: 41-210
Cow position: chr13:62251897-62252066 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 140, 68

Conread position: 44-166
Cow position: chr13:25547638-25547760 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 44-170
Cow position: chr13:28376616-28376740 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 44-188
Cow position: chr13:17135269-17135414 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 44-206
Cow position: chr13:20115192-20115033 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 132, 0

Conread position: 44-207
Cow position: chr13:44003645-44003476 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 79, 74

Conread position: 44-211
Cow position: chr13:56019050-56019224 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 126
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 136, 98

Conread position: 44-213
Cow position: chr13:15162688-15162854 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 136, 0

Conread position: 44-213
Cow position: chr13:15993330-15993154 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 118, 24

Conread position: 44-213
Cow position: chr13:20378376-20378546 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 126, 73

Conread position: 44-213
Cow position: chr13:43576958-43576789 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-215
Cow position: chr13:23685055-23685223 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 124
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 131, 0

Conread position: 44-215
Cow position: chr13:26377472-26377652 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 62

Conread position: 44-222
Cow position: chr13:3149487-3149660 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 44-222
Cow position: chr13:18995070-18994886 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 122, 0

Conread position: 44-224
Cow position: chr13:5659823-5659997 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 44-224
Cow position: chr13:25926734-25926556 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 161, 81

Conread position: 44-241
Cow position: chr13:48127052-48126848 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 145
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 130, 167

Conread position: 44-242
Cow position: chr13:28605447-28605643 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 173, 0

Conread position: 44-332
Cow position: chr13:31398403-31398108 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 196
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 48

Conread position: 45-168
Cow position: chr13:8537765-8537641 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 45-174
Cow position: chr13:44278292-44278162 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 45-175
Cow position: chr13:29665964-29665834 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 45-210
Cow position: chr13:52894090-52893922 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 122
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 120, 66

Conread position: 45-213
Cow position: chr13:10279868-10279693 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 121, 0

Conread position: 45-222
Cow position: chr13:21246766-21246940 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 127, 0

Conread position: 45-222
Cow position: chr13:45352974-45352789 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 127, 0

Conread position: 45-227
Cow position: chr13:20698340-20698529 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 121, 162

Conread position: 45-349
Cow position: chr13:39347283-39347597 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 209
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 135, 6

Conread position: 46-178
Cow position: chr13:51128130-51128262 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 98
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 46-218
Cow position: chr13:30148621-30148791 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 134, 79

Conread position: 46-222
Cow position: chr13:24094372-24094544 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 123
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 47-178
Cow position: chr13:2776229-2776098 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 47-222
Cow position: chr13:18058309-18058475 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 158, 51

Conread position: 48-197
Cow position: chr13:46516001-46515846 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 48-208
Cow position: chr13:23399706-23399542 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 129, 83

Conread position: 48-210
Cow position: chr13:25817467-25817314 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 51-197
Cow position: chr13:42614021-42613878 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 113, 71

Conread position: 51-202
Cow position: chr13:42203962-42203813 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 72

Conread position: 51-208
Cow position: chr13:26261851-26262006 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 143, 124

Conread position: 51-213
Cow position: chr13:20854519-20854689 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 71, 50

Conread position: 51-222
Cow position: chr13:8682392-8682224 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 116, 123

Conread position: 52-209
Cow position: chr13:57929634-57929787 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 79

Conread position: 55-159
Cow position: chr13:242568-242464 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 84
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 57-201
Cow position: chr13:8423336-8423188 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 123, 0

Show alignments to all cow chromosomes.