Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-174 |
| Cow position: | chr15:12785521-12785348 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 20 |
| Conread position: | 1-174 |
| Cow position: | chr15:34223959-34223786 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 123 |
| Conread position: | 1-174 |
| Cow position: | chr15:38652508-38652682 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 1-210 |
| Cow position: | chr15:33382673-33382463 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 1-214 |
| Cow position: | chr15:49483721-49483509 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 107 |
| Conread position: | 1-228 |
| Cow position: | chr15:26896601-26896832 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 2-216 |
| Cow position: | chr15:13395639-13395430 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 2-223 |
| Cow position: | chr15:13432577-13432346 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 131 |
| Conread position: | 7-174 |
| Cow position: | chr15:39619227-39619060 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-210 |
| Cow position: | chr15:17084294-17084083 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 7-214 |
| Cow position: | chr15:608231-608021 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 8-214 |
| Cow position: | chr15:20459224-20459429 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 197, 167 |
| Conread position: | 8-215 |
| Cow position: | chr15:43626553-43626347 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 94, 90 |
| Conread position: | 8-217 |
| Cow position: | chr15:36793410-36793622 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 8-222 |
| Cow position: | chr15:16928010-16928227 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 165, 114 |
| Conread position: | 8-224 |
| Cow position: | chr15:2968422-2968198 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 22, 200 |
| Conread position: | 13-173 |
| Cow position: | chr15:20534371-20534531 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-210 |
| Cow position: | chr15:50333058-50332858 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 106, 33 |
| Conread position: | 18-222 |
| Cow position: | chr15:20566988-20566793 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 21-208 |
| Cow position: | chr15:19002209-19002393 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 21-213 |
| Cow position: | chr15:6227111-6227302 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 155, 103 |
| Conread position: | 21-222 |
| Cow position: | chr15:21893849-21893648 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 155, 18 |
| Conread position: | 21-229 |
| Cow position: | chr15:48052533-48052740 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 155, 104 |
| Conread position: | 22-223 |
| Cow position: | chr15:44810139-44809931 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 158, 185 |
| Conread position: | 36-208 |
| Cow position: | chr15:23572630-23572810 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 37-174 |
| Cow position: | chr15:12045482-12045620 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 37-197 |
| Cow position: | chr15:41527917-41528076 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 143, 89 |
| Conread position: | 37-207 |
| Cow position: | chr15:36391729-36391551 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 37-215 |
| Cow position: | chr15:18073774-18073590 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 37-222 |
| Cow position: | chr15:24453019-24453202 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 65, 90 |
| Conread position: | 38-167 |
| Cow position: | chr15:40562400-40562527 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 38-205 |
| Cow position: | chr15:44119413-44119587 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 38-217 |
| Cow position: | chr15:44089109-44089293 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 38-222 |
| Cow position: | chr15:22443930-22444114 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-241 |
| Cow position: | chr15:46059416-46059212 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 140 |
| Conread position: | 38-243 |
| Cow position: | chr15:4284428-4284224 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 175, 137 |
| Conread position: | 39-221 |
| Cow position: | chr15:21943108-21942915 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 79, 67 |
| Conread position: | 39-222 |
| Cow position: | chr15:7811476-7811655 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 39-239 |
| Cow position: | chr15:38862150-38861946 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 39-254 |
| Cow position: | chr15:36435258-36435035 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 44-148 |
| Cow position: | chr15:27900462-27900566 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 85 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-174 |
| Cow position: | chr15:12913450-12913578 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 44-174 |
| Cow position: | chr15:26617987-26617856 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 44-208 |
| Cow position: | chr15:16415345-16415175 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 44-210 |
| Cow position: | chr15:16657521-16657358 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 44-213 |
| Cow position: | chr15:4500751-4500583 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 81, 133 |
| Conread position: | 44-213 |
| Cow position: | chr15:21821876-21822047 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 44-214 |
| Cow position: | chr15:19553876-19554053 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 122, 66 |
| Conread position: | 44-215 |
| Cow position: | chr15:17762957-17762786 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 136, 74 |
| Conread position: | 44-225 |
| Cow position: | chr15:32300426-32300244 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 44-225 |
| Cow position: | chr15:42380976-42380791 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 136, 164 |
| Conread position: | 44-241 |
| Cow position: | chr15:28099160-28098968 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 132, 77 |
| Conread position: | 46-174 |
| Cow position: | chr15:17196194-17196066 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-210 |
| Cow position: | chr15:39473886-39474047 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 46-212 |
| Cow position: | chr15:17124422-17124595 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 134, 161 |
| Conread position: | 47-213 |
| Cow position: | chr15:18703890-18704048 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 50, 74 |
| Conread position: | 48-174 |
| Cow position: | chr15:14760593-14760719 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 51-213 |
| Cow position: | chr15:26380703-26380873 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 54-221 |
| Cow position: | chr15:2931529-2931694 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 77 |
Show alignments to all cow chromosomes.