Cow genome map

Conread name: rsug05_n17.y1

Conread position: 1-167
Cow position: chr16:23811121-23811285 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 1-174
Cow position: chr16:7442101-7441931 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 1-174
Cow position: chr16:12220678-12220855 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 1-197
Cow position: chr16:30305815-30305622 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 99, 31

Conread position: 1-206
Cow position: chr16:23955835-23955622 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 30, 99

Conread position: 1-208
Cow position: chr16:21370190-21369977 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 96, 31

Conread position: 1-210
Cow position: chr16:44138495-44138285 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 1-213
Cow position: chr16:7928388-7928165 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 159
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 1-213
Cow position: chr16:19053886-19053670 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 155
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 20, 126

Conread position: 1-213
Cow position: chr16:33198440-33198217 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 124, 0

Conread position: 1-215
Cow position: chr16:2750978-2751180 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 148
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 1-222
Cow position: chr16:8738062-8738286 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 122

Conread position: 1-237
Cow position: chr16:30662272-30662033 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 161
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 34, 163

Conread position: 2-210
Cow position: chr16:8065890-8065683 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 28, 175

Conread position: 2-210
Cow position: chr16:15714107-15714317 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 2-218
Cow position: chr16:8522387-8522170 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 160, 29

Conread position: 2-221
Cow position: chr16:38243663-38243438 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 150
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 178, 0

Conread position: 7-173
Cow position: chr16:31575149-31575315 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 117
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 7-174
Cow position: chr16:38663705-38663539 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 7-222
Cow position: chr16:2223394-2223179 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 170

Conread position: 8-174
Cow position: chr16:7812696-7812862 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 8-174
Cow position: chr16:9730200-9730035 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 8-174
Cow position: chr16:32142096-32142261 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 8-210
Cow position: chr16:56615497-56615289 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 158, 78

Conread position: 8-214
Cow position: chr16:10249813-10249607 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 8-217
Cow position: chr16:46548263-46548042 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 155
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 128, 0

Conread position: 8-220
Cow position: chr16:11003559-11003350 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 141
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 167, 0

Conread position: 13-210
Cow position: chr16:45122046-45122244 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 138
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 124, 166

Conread position: 13-222
Cow position: chr16:22323799-22323596 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 13-222
Cow position: chr16:43308550-43308343 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 149
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 167, 74

Conread position: 13-231
Cow position: chr16:50442559-50442778 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 147
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 99, 0

Conread position: 21-166
Cow position: chr16:50289171-50289312 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 21-174
Cow position: chr16:15023612-15023460 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 141, 0

Conread position: 21-174
Cow position: chr16:33290403-33290556 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 21-206
Cow position: chr16:44144407-44144600 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 159, 0

Conread position: 21-210
Cow position: chr16:18048136-18047950 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 147, 0

Conread position: 21-222
Cow position: chr16:9596389-9596587 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 159, 103

Conread position: 21-222
Cow position: chr16:45193790-45193581 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 159, 106

Conread position: 21-236
Cow position: chr16:53451724-53451931 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 22-210
Cow position: chr16:21044316-21044512 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 144, 0

Conread position: 23-197
Cow position: chr16:43758625-43758446 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 138, 0

Conread position: 23-210
Cow position: chr16:13996175-13995983 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 157, 0

Conread position: 23-221
Cow position: chr16:8493970-8493776 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 134
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 107, 0

Conread position: 23-222
Cow position: chr16:38581023-38581219 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 136
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 157, 0

Conread position: 29-222
Cow position: chr16:21002348-21002142 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 134, 0

Conread position: 33-203
Cow position: chr16:46184188-46184356 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 143, 0

Conread position: 36-215
Cow position: chr16:56595356-56595171 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 144, 171

Conread position: 37-173
Cow position: chr16:7665672-7665808 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 37-174
Cow position: chr16:9097058-9097195 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 37-174
Cow position: chr16:15949473-15949339 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 37-204
Cow position: chr16:5243121-5243288 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 101, 143

Conread position: 37-204
Cow position: chr16:14343614-14343782 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 143, 0

Conread position: 37-213
Cow position: chr16:8810059-8809887 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 143, 85

Conread position: 37-243
Cow position: chr16:25419219-25419018 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 195, 138

Conread position: 38-166
Cow position: chr16:4192398-4192270 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 97
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 38-173
Cow position: chr16:27327089-27326954 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 38-174
Cow position: chr16:28233269-28233133 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 38-215
Cow position: chr16:56912651-56912476 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 103, 9

Conread position: 39-174
Cow position: chr16:19282042-19282176 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 39-210
Cow position: chr16:4857065-4856897 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 147, 0

Conread position: 39-213
Cow position: chr16:10011816-10011632 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 0

Conread position: 39-213
Cow position: chr16:20614535-20614701 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 39-224
Cow position: chr16:55784715-55784529 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 87, 73

Conread position: 39-240
Cow position: chr16:42107666-42107862 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 136, 0

Conread position: 44-166
Cow position: chr16:4277512-4277391 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 44-173
Cow position: chr16:28444448-28444319 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 44-174
Cow position: chr16:3049112-3048983 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 81, 0

Conread position: 44-174
Cow position: chr16:15407517-15407387 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 44-174
Cow position: chr16:31241252-31241123 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 66, 0

Conread position: 44-208
Cow position: chr16:56082323-56082151 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 122, 0

Conread position: 44-210
Cow position: chr16:10032904-10033078 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 125
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 122, 0

Conread position: 44-210
Cow position: chr16:20205503-20205672 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 136, 0

Conread position: 44-215
Cow position: chr16:29311565-29311747 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 74, 0

Conread position: 44-244
Cow position: chr16:9958871-9959071 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 82

Conread position: 45-173
Cow position: chr16:47662771-47662899 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 45-210
Cow position: chr16:11775951-11775795 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 46-207
Cow position: chr16:24672819-24672650 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 46, 53

Conread position: 46-210
Cow position: chr16:21442567-21442396 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 72, 37

Conread position: 46-221
Cow position: chr16:47274683-47274511 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 129, 0

Conread position: 46-222
Cow position: chr16:17617319-17617148 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 129, 0

Conread position: 46-248
Cow position: chr16:40446305-40446509 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 52, 133

Conread position: 48-174
Cow position: chr16:51393345-51393218 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 77, 53

Conread position: 48-242
Cow position: chr16:27117350-27117551 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 118, 175

Conread position: 52-241
Cow position: chr16:16232106-16232295 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.