Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-174 |
| Cow position: | chr17:6329152-6329321 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 132 |
| Conread position: | 1-177 |
| Cow position: | chr17:13414331-13414153 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-206 |
| Cow position: | chr17:1634455-1634255 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 15, 126 |
| Conread position: | 1-228 |
| Cow position: | chr17:21039594-21039816 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 15, 126 |
| Conread position: | 1-248 |
| Cow position: | chr17:1463294-1463051 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 176 |
| Conread position: | 1-255 |
| Cow position: | chr17:21718960-21718702 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 111 |
| Conread position: | 2-250 |
| Cow position: | chr17:25117922-25118177 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 224 |
| Conread position: | 3-197 |
| Cow position: | chr17:32333052-32332852 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 13, 117 |
| Conread position: | 7-213 |
| Cow position: | chr17:40355301-40355506 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 14, 170 |
| Conread position: | 8-166 |
| Cow position: | chr17:5011883-5012042 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 8-208 |
| Cow position: | chr17:24559336-24559545 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 8-210 |
| Cow position: | chr17:21806406-21806207 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 91, 99 |
| Conread position: | 8-222 |
| Cow position: | chr17:17222386-17222610 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 8-222 |
| Cow position: | chr17:26072715-26072501 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 172, 193 |
| Conread position: | 10-151 |
| Cow position: | chr17:43957708-43957849 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-235 |
| Cow position: | chr17:14652729-14652504 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 14-210 |
| Cow position: | chr17:21466211-21466005 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 14-215 |
| Cow position: | chr17:25473228-25473033 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 191, 111 |
| Conread position: | 14-220 |
| Cow position: | chr17:9824721-9824919 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 15-230 |
| Cow position: | chr17:32989529-32989735 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 15-230 |
| Cow position: | chr17:32993571-32993364 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 191, 107 |
| Conread position: | 20-174 |
| Cow position: | chr17:5013018-5012859 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 21-166 |
| Cow position: | chr17:26757389-26757243 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 21-209 |
| Cow position: | chr17:28795924-28795739 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 21-244 |
| Cow position: | chr17:20884582-20884805 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 104, 180 |
| Conread position: | 23-213 |
| Cow position: | chr17:20800874-20801071 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 34-222 |
| Cow position: | chr17:21236594-21236782 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 37-174 |
| Cow position: | chr17:6767186-6767049 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-203 |
| Cow position: | chr17:20992967-20992803 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 100, 73 |
| Conread position: | 37-212 |
| Cow position: | chr17:12289334-12289154 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 144, 82 |
| Conread position: | 37-213 |
| Cow position: | chr17:27795729-27795912 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 129, 44 |
| Conread position: | 37-222 |
| Cow position: | chr17:25467057-25467241 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 37-229 |
| Cow position: | chr17:25584316-25584507 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 37-231 |
| Cow position: | chr17:6787011-6787216 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 38-173 |
| Cow position: | chr17:2810708-2810842 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 38-174 |
| Cow position: | chr17:11618660-11618796 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-174 |
| Cow position: | chr17:11921089-11920953 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-208 |
| Cow position: | chr17:19544156-19543981 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 19, 41 |
| Conread position: | 38-209 |
| Cow position: | chr17:24587700-24587864 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 38-221 |
| Cow position: | chr17:20881733-20881556 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 38-222 |
| Cow position: | chr17:26225103-26225282 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 38-245 |
| Cow position: | chr17:21489549-21489344 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 83 |
| Conread position: | 39-212 |
| Cow position: | chr17:21870648-21870470 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 39-213 |
| Cow position: | chr17:4264300-4264483 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 39-213 |
| Cow position: | chr17:7733041-7732859 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 39-222 |
| Cow position: | chr17:17782132-17782317 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 70, 87 |
| Conread position: | 39-222 |
| Cow position: | chr17:18201834-18202015 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 72, 137 |
| Conread position: | 39-222 |
| Cow position: | chr17:32027375-32027183 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 183 |
| Conread position: | 39-249 |
| Cow position: | chr17:31231884-31231678 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 40-211 |
| Cow position: | chr17:40276818-40276988 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 140, 82 |
| Conread position: | 43-224 |
| Cow position: | chr17:34187957-34188136 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 171, 132 |
| Conread position: | 44-174 |
| Cow position: | chr17:3387799-3387928 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 44-174 |
| Cow position: | chr17:42780242-42780110 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 43 |
| Conread position: | 44-178 |
| Cow position: | chr17:26183426-26183560 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-205 |
| Cow position: | chr17:20359194-20359353 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 132 |
| Conread position: | 44-209 |
| Cow position: | chr17:4817609-4817782 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 44-210 |
| Cow position: | chr17:7803093-7802919 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 44-213 |
| Cow position: | chr17:36814443-36814622 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 44-217 |
| Cow position: | chr17:39963959-39964138 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 136, 52 |
| Conread position: | 44-221 |
| Cow position: | chr17:9260530-9260344 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 132, 78 |
| Conread position: | 44-221 |
| Cow position: | chr17:15355013-15355187 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 44-222 |
| Cow position: | chr17:8663586-8663761 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 44-226 |
| Cow position: | chr17:15883753-15883945 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 45-214 |
| Cow position: | chr17:10222127-10221950 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 45-217 |
| Cow position: | chr17:14025827-14025657 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 163, 130 |
| Conread position: | 46-210 |
| Cow position: | chr17:25342657-25342498 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 46-221 |
| Cow position: | chr17:5048014-5048194 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 46-222 |
| Cow position: | chr17:5280571-5280397 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 85, 135 |
| Conread position: | 47-166 |
| Cow position: | chr17:1081289-1081409 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 47-210 |
| Cow position: | chr17:9770588-9770750 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 52-197 |
| Cow position: | chr17:31985851-31985709 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 54-214 |
| Cow position: | chr17:20157699-20157863 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 78 |
| Conread position: | 56-214 |
| Cow position: | chr17:18673946-18673786 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 124, 146 |
| Conread position: | 191-475 |
| Cow position: | chr17:228469-228183 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 193-488 |
| Cow position: | chr17:6002177-6001879 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 204-486 |
| Cow position: | chr17:23324605-23324318 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 147, 40 |
Show alignments to all cow chromosomes.