Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-174 |
| Cow position: | chr18:21969840-21969666 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-196 |
| Cow position: | chr18:2774175-2773978 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 1-206 |
| Cow position: | chr18:32600015-32600229 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-209 |
| Cow position: | chr18:5632231-5632442 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 123 |
| Conread position: | 1-209 |
| Cow position: | chr18:49038425-49038632 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 123 |
| Conread position: | 1-210 |
| Cow position: | chr18:21782654-21782864 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 165, 30 |
| Conread position: | 1-211 |
| Cow position: | chr18:35751414-35751198 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 168 |
| Conread position: | 1-213 |
| Cow position: | chr18:35827410-35827196 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 36, 125 |
| Conread position: | 1-221 |
| Cow position: | chr18:10977247-10977031 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 125 |
| Conread position: | 2-174 |
| Cow position: | chr18:35874044-35874213 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 157, 141 |
| Conread position: | 8-174 |
| Cow position: | chr18:43283784-43283621 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 8-199 |
| Cow position: | chr18:23821860-23821671 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 8-201 |
| Cow position: | chr18:50974322-50974118 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 8-207 |
| Cow position: | chr18:50566873-50567080 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 13-234 |
| Cow position: | chr18:53093041-53092814 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 112, 144 |
| Conread position: | 14-178 |
| Cow position: | chr18:24266429-24266264 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 14-213 |
| Cow position: | chr18:49603065-49602871 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 14-222 |
| Cow position: | chr18:44917735-44917935 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 191, 104 |
| Conread position: | 14-235 |
| Cow position: | chr18:1954611-1954385 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 144 |
| Conread position: | 21-174 |
| Cow position: | chr18:42427605-42427751 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 21-174 |
| Cow position: | chr18:51643380-51643234 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 21-210 |
| Cow position: | chr18:45185857-45186048 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 159, 181 |
| Conread position: | 21-221 |
| Cow position: | chr18:40063080-40063286 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 22-206 |
| Cow position: | chr18:33896432-33896239 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 28-229 |
| Cow position: | chr18:10051739-10051946 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 148, 78 |
| Conread position: | 34-174 |
| Cow position: | chr18:16545467-16545327 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-165 |
| Cow position: | chr18:56463729-56463602 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 37-208 |
| Cow position: | chr18:5189692-5189525 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 37-224 |
| Cow position: | chr18:22045412-22045219 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 129, 20 |
| Conread position: | 37-224 |
| Cow position: | chr18:31557159-31556965 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 38-160 |
| Cow position: | chr18:48961936-48962060 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 38-174 |
| Cow position: | chr18:17195343-17195211 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 38-174 |
| Cow position: | chr18:47175379-47175243 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 38-210 |
| Cow position: | chr18:38937823-38937988 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 38-213 |
| Cow position: | chr18:52382906-52383078 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 38-215 |
| Cow position: | chr18:52251855-52251670 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 38-226 |
| Cow position: | chr18:50632440-50632260 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 183, 68 |
| Conread position: | 38-235 |
| Cow position: | chr18:3211880-3212076 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 142, 86 |
| Conread position: | 39-166 |
| Cow position: | chr18:45903894-45903769 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 39-174 |
| Cow position: | chr18:35795219-35795085 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 39-177 |
| Cow position: | chr18:8208422-8208285 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 72, 84 |
| Conread position: | 39-214 |
| Cow position: | chr18:3180414-3180582 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 39-215 |
| Cow position: | chr18:50004702-50004531 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 165, 84 |
| Conread position: | 43-207 |
| Cow position: | chr18:48594209-48594050 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 44-166 |
| Cow position: | chr18:4758025-4757903 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 44-166 |
| Cow position: | chr18:37187989-37187867 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-166 |
| Cow position: | chr18:39662787-39662908 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 44-178 |
| Cow position: | chr18:11657665-11657798 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 44-209 |
| Cow position: | chr18:44514094-44514257 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 132 |
| Conread position: | 44-213 |
| Cow position: | chr18:21751386-21751563 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 136, 74 |
| Conread position: | 44-222 |
| Cow position: | chr18:27637500-27637683 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 44-229 |
| Cow position: | chr18:238108-237926 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 44-234 |
| Cow position: | chr18:12273666-12273853 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 135, 81 |
| Conread position: | 45-166 |
| Cow position: | chr18:39623809-39623931 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 45-224 |
| Cow position: | chr18:21528656-21528842 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 74 |
| Conread position: | 46-166 |
| Cow position: | chr18:39710117-39710238 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 46-206 |
| Cow position: | chr18:32002-32166 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 46-206 |
| Cow position: | chr18:52387210-52387043 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 134, 96 |
| Conread position: | 46-213 |
| Cow position: | chr18:45573390-45573563 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 134, 85 |
| Conread position: | 46-214 |
| Cow position: | chr18:6818654-6818483 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 60 |
| Conread position: | 46-219 |
| Cow position: | chr18:27078874-27079055 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 46-222 |
| Cow position: | chr18:49970643-49970471 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 47-222 |
| Cow position: | chr18:35535135-35534960 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 129, 84 |
| Conread position: | 48-212 |
| Cow position: | chr18:42988295-42988124 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 51-213 |
| Cow position: | chr18:4907162-4907326 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 51-222 |
| Cow position: | chr18:35171363-35171540 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 51-245 |
| Cow position: | chr18:37799992-37800193 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 52-200 |
| Cow position: | chr18:23810104-23809952 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 128, 113 |
| Conread position: | 54-247 |
| Cow position: | chr18:4857706-4857504 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 56-212 |
| Cow position: | chr18:38211176-38211340 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 59-166 |
| Cow position: | chr18:7487255-7487362 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.