Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-173 |
| Cow position: | chr19:27966161-27965989 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-178 |
| Cow position: | chr19:42517270-42517093 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 1-208 |
| Cow position: | chr19:25382702-25382483 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-210 |
| Cow position: | chr19:55957583-55957366 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 140, 20 |
| Conread position: | 1-211 |
| Cow position: | chr19:23304503-23304293 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 179, 121 |
| Conread position: | 1-211 |
| Cow position: | chr19:34166356-34166564 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 179, 30 |
| Conread position: | 1-213 |
| Cow position: | chr19:38410851-38411075 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-215 |
| Cow position: | chr19:729757-729540 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 175, 30 |
| Conread position: | 1-222 |
| Cow position: | chr19:7148078-7147854 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 29, 180 |
| Conread position: | 2-179 |
| Cow position: | chr19:21756920-21756742 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 3-225 |
| Cow position: | chr19:47859328-47859098 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 4-174 |
| Cow position: | chr19:35444517-35444347 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-210 |
| Cow position: | chr19:26754030-26754239 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 68, 93 |
| Conread position: | 13-166 |
| Cow position: | chr19:30227519-30227672 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 14-211 |
| Cow position: | chr19:3621430-3621631 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 150, 67 |
| Conread position: | 14-214 |
| Cow position: | chr19:34758002-34757782 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 16-221 |
| Cow position: | chr19:12698321-12698529 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 148, 102 |
| Conread position: | 20-212 |
| Cow position: | chr19:33988076-33988262 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 92, 39 |
| Conread position: | 20-225 |
| Cow position: | chr19:1900723-1900508 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 110, 33 |
| Conread position: | 21-169 |
| Cow position: | chr19:52568468-52568317 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 21-209 |
| Cow position: | chr19:2221068-2220874 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 81, 77 |
| Conread position: | 21-209 |
| Cow position: | chr19:12945299-12945104 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 155, 133 |
| Conread position: | 21-213 |
| Cow position: | chr19:36845257-36845448 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 137, 160 |
| Conread position: | 21-213 |
| Cow position: | chr19:41718957-41718758 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 85 |
| Conread position: | 37-158 |
| Cow position: | chr19:34819163-34819044 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 37-166 |
| Cow position: | chr19:7558568-7558695 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 37-174 |
| Cow position: | chr19:29139225-29139362 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-207 |
| Cow position: | chr19:5912937-5912758 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 37-208 |
| Cow position: | chr19:20622677-20622845 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 37-210 |
| Cow position: | chr19:17354881-17355059 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 125, 62 |
| Conread position: | 37-224 |
| Cow position: | chr19:12761080-12760893 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-209 |
| Cow position: | chr19:17259931-17260111 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 38-209 |
| Cow position: | chr19:38732163-38732338 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 138, 85 |
| Conread position: | 38-213 |
| Cow position: | chr19:40127142-40126972 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 38-214 |
| Cow position: | chr19:27968672-27968491 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 138, 112 |
| Conread position: | 38-222 |
| Cow position: | chr19:14588429-14588613 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-246 |
| Cow position: | chr19:30007216-30007415 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 39-173 |
| Cow position: | chr19:51637065-51637201 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 39-174 |
| Cow position: | chr19:36978292-36978428 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 74 |
| Conread position: | 39-213 |
| Cow position: | chr19:6854943-6855110 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 44-174 |
| Cow position: | chr19:21816993-21817123 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-206 |
| Cow position: | chr19:12747746-12747579 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 44-213 |
| Cow position: | chr19:8864771-8864936 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 44-213 |
| Cow position: | chr19:24068254-24068078 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 136, 163 |
| Conread position: | 44-215 |
| Cow position: | chr19:4537234-4537060 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 136, 122 |
| Conread position: | 45-174 |
| Cow position: | chr19:51294255-51294128 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 46-166 |
| Cow position: | chr19:43431295-43431173 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 46-173 |
| Cow position: | chr19:42868047-42868174 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-207 |
| Cow position: | chr19:19738032-19738201 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 46-209 |
| Cow position: | chr19:8185235-8185404 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 120, 76 |
| Conread position: | 46-224 |
| Cow position: | chr19:42776464-42776636 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 46-230 |
| Cow position: | chr19:23416851-23416666 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 150, 180 |
| Conread position: | 47-248 |
| Cow position: | chr19:22871222-22871016 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 129, 75 |
| Conread position: | 52-222 |
| Cow position: | chr19:42217278-42217099 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 59, 92 |
| Conread position: | 204-475 |
| Cow position: | chr19:52151770-52151493 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 111, 40 |
Show alignments to all cow chromosomes.