Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-174 |
| Cow position: | chr21:44251783-44251608 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-208 |
| Cow position: | chr21:41621185-41621391 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 10, 169 |
| Conread position: | 1-209 |
| Cow position: | chr21:40475559-40475765 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 16, 175 |
| Conread position: | 1-212 |
| Cow position: | chr21:14452294-14452511 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-215 |
| Cow position: | chr21:32339680-32339471 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 127 |
| Conread position: | 1-222 |
| Cow position: | chr21:33779-34015 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 31, 214 |
| Conread position: | 1-224 |
| Cow position: | chr21:34654134-34654348 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 131 |
| Conread position: | 1-239 |
| Cow position: | chr21:26018439-26018679 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 1-241 |
| Cow position: | chr21:18059901-18059661 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 1-242 |
| Cow position: | chr21:8431040-8430798 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 10, 176 |
| Conread position: | 2-178 |
| Cow position: | chr21:48637695-48637519 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-222 |
| Cow position: | chr21:47101-47337 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 6-159 |
| Cow position: | chr21:42017536-42017382 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 8-174 |
| Cow position: | chr21:23535778-23535945 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 158, 0 |
| Conread position: | 8-174 |
| Cow position: | chr21:43316826-43316660 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-208 |
| Cow position: | chr21:20153025-20153220 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 103, 84 |
| Conread position: | 8-210 |
| Cow position: | chr21:13580482-13580691 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 158, 98 |
| Conread position: | 8-215 |
| Cow position: | chr21:6834118-6834333 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 172, 103 |
| Conread position: | 12-181 |
| Cow position: | chr21:12640543-12640711 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 12-201 |
| Cow position: | chr21:15305226-15305028 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 13-139 |
| Cow position: | chr21:10538181-10538055 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-208 |
| Cow position: | chr21:4108849-4109050 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 89, 84 |
| Conread position: | 18-214 |
| Cow position: | chr21:16796930-16797131 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 93, 187 |
| Conread position: | 21-208 |
| Cow position: | chr21:11006689-11006505 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 85 |
| Conread position: | 21-213 |
| Cow position: | chr21:9416332-9416519 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 87 |
| Conread position: | 21-218 |
| Cow position: | chr21:20160758-20160959 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 21-220 |
| Cow position: | chr21:42501132-42501327 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 21-242 |
| Cow position: | chr21:12348847-12349066 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 201, 155 |
| Conread position: | 34-173 |
| Cow position: | chr21:15271342-15271206 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 36-239 |
| Cow position: | chr21:6153897-6154097 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 37-170 |
| Cow position: | chr21:41041042-41041176 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 87, 72 |
| Conread position: | 37-174 |
| Cow position: | chr21:2537041-2536904 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-212 |
| Cow position: | chr21:6291844-6292026 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 143, 166 |
| Conread position: | 37-213 |
| Cow position: | chr21:16152539-16152713 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 140, 88 |
| Conread position: | 37-220 |
| Cow position: | chr21:27744123-27744305 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 73 |
| Conread position: | 38-174 |
| Cow position: | chr21:10264132-10264267 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 38-174 |
| Cow position: | chr21:18568540-18568405 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 38-174 |
| Cow position: | chr21:37706316-37706180 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-206 |
| Cow position: | chr21:42905299-42905130 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 38-210 |
| Cow position: | chr21:29418667-29418838 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 156, 130 |
| Conread position: | 38-222 |
| Cow position: | chr21:16498615-16498792 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 39-179 |
| Cow position: | chr21:8545923-8545783 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-213 |
| Cow position: | chr21:13656536-13656354 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 141, 49 |
| Conread position: | 39-213 |
| Cow position: | chr21:17403750-17403567 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 39-213 |
| Cow position: | chr21:23980082-23979900 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 39-213 |
| Cow position: | chr21:42047942-42047761 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 39-214 |
| Cow position: | chr21:36695990-36695809 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 44-174 |
| Cow position: | chr21:11353165-11353295 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-174 |
| Cow position: | chr21:27521234-27521109 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 44-177 |
| Cow position: | chr21:48205116-48204983 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-178 |
| Cow position: | chr21:17193646-17193512 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 44-178 |
| Cow position: | chr21:46809661-46809528 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 44-208 |
| Cow position: | chr21:24296663-24296491 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 50 |
| Conread position: | 44-208 |
| Cow position: | chr21:28882286-28882446 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 44-210 |
| Cow position: | chr21:3135764-3135591 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 44-212 |
| Cow position: | chr21:13134705-13134875 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 45-174 |
| Cow position: | chr21:7424908-7424781 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 45-209 |
| Cow position: | chr21:10660788-10660616 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 7, 63 |
| Conread position: | 45-213 |
| Cow position: | chr21:10978843-10978679 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 45-249 |
| Cow position: | chr21:18449858-18450061 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 176, 127 |
| Conread position: | 46-210 |
| Cow position: | chr21:9477270-9477441 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 79 |
| Conread position: | 46-212 |
| Cow position: | chr21:1464450-1464624 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 46-213 |
| Cow position: | chr21:27677587-27677763 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 47-210 |
| Cow position: | chr21:36508342-36508501 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 48-220 |
| Cow position: | chr21:10004777-10004608 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 51-213 |
| Cow position: | chr21:31652496-31652666 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 51-241 |
| Cow position: | chr21:41155982-41156167 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 71-228 |
| Cow position: | chr21:40821763-40821603 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 133 |
| Conread position: | 218-476 |
| Cow position: | chr21:2510802-2511066 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 128, 11 |
Show alignments to all cow chromosomes.