Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-166 |
| Cow position: | chr22:2643923-2644090 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 1-170 |
| Cow position: | chr22:5595816-5595647 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 1-174 |
| Cow position: | chr22:16235512-16235336 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-177 |
| Cow position: | chr22:43131565-43131386 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-195 |
| Cow position: | chr22:28146669-28146871 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-197 |
| Cow position: | chr22:41982725-41982527 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 179, 31 |
| Conread position: | 1-207 |
| Cow position: | chr22:6176292-6176076 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1-207 |
| Cow position: | chr22:12157851-12157649 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 119 |
| Conread position: | 1-209 |
| Cow position: | chr22:35215541-35215759 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-213 |
| Cow position: | chr22:7497117-7496895 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-213 |
| Cow position: | chr22:15950390-15950178 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 182, 31 |
| Conread position: | 1-216 |
| Cow position: | chr22:1065098-1065321 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 207 |
| Conread position: | 1-222 |
| Cow position: | chr22:1659157-1659386 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 29, 208 |
| Conread position: | 1-224 |
| Cow position: | chr22:36432977-36432762 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-242 |
| Cow position: | chr22:14487928-14488170 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 176 |
| Conread position: | 2-208 |
| Cow position: | chr22:24134329-24134127 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 2-213 |
| Cow position: | chr22:6754273-6754052 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 29, 208 |
| Conread position: | 3-173 |
| Cow position: | chr22:9347051-9346883 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 5-174 |
| Cow position: | chr22:22860912-22860746 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 8-139 |
| Cow position: | chr22:16044414-16044283 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 8-178 |
| Cow position: | chr22:14378690-14378523 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 24 |
| Conread position: | 8-210 |
| Cow position: | chr22:1714863-1714664 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 173, 0 |
| Conread position: | 8-215 |
| Cow position: | chr22:16541650-16541446 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 9-179 |
| Cow position: | chr22:18933713-18933541 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 10-198 |
| Cow position: | chr22:32514297-32514483 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 92, 86 |
| Conread position: | 13-174 |
| Cow position: | chr22:6289496-6289334 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 101 |
| Conread position: | 14-166 |
| Cow position: | chr22:22433050-22433203 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 14-218 |
| Cow position: | chr22:13957636-13957429 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 157, 108 |
| Conread position: | 18-213 |
| Cow position: | chr22:43965710-43965915 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 20-166 |
| Cow position: | chr22:14676699-14676845 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-174 |
| Cow position: | chr22:2704313-2704464 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 21-209 |
| Cow position: | chr22:3250979-3250783 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 21-219 |
| Cow position: | chr22:33373254-33373462 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 22-206 |
| Cow position: | chr22:9735285-9735474 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 152, 109 |
| Conread position: | 22-213 |
| Cow position: | chr22:39602298-39602497 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 23-174 |
| Cow position: | chr22:27907862-27907711 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-213 |
| Cow position: | chr22:12637624-12637813 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 136, 94 |
| Conread position: | 37-160 |
| Cow position: | chr22:25312540-25312663 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-173 |
| Cow position: | chr22:12389130-12389266 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-174 |
| Cow position: | chr22:1074295-1074432 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-174 |
| Cow position: | chr22:8331029-8331166 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-209 |
| Cow position: | chr22:18926387-18926564 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 37-209 |
| Cow position: | chr22:27401768-27401941 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 87 |
| Conread position: | 37-213 |
| Cow position: | chr22:15490685-15490867 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 143, 93 |
| Conread position: | 37-220 |
| Cow position: | chr22:27275493-27275676 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-222 |
| Cow position: | chr22:33448050-33447868 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 37-225 |
| Cow position: | chr22:30176748-30176936 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-247 |
| Cow position: | chr22:43131113-43130903 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-208 |
| Cow position: | chr22:1776091-1776270 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 38-209 |
| Cow position: | chr22:32698792-32698961 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 163, 137 |
| Conread position: | 38-222 |
| Cow position: | chr22:1046160-1045970 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 38-222 |
| Cow position: | chr22:9372553-9372744 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 38-227 |
| Cow position: | chr22:32892725-32892922 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 39-178 |
| Cow position: | chr22:8418494-8418633 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-209 |
| Cow position: | chr22:12854072-12853903 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 149, 66 |
| Conread position: | 39-213 |
| Cow position: | chr22:530545-530371 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 141, 83 |
| Conread position: | 39-225 |
| Cow position: | chr22:12902822-12902644 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 39-258 |
| Cow position: | chr22:21601493-21601277 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 188, 29 |
| Conread position: | 40-213 |
| Cow position: | chr22:11697161-11696983 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 44-166 |
| Cow position: | chr22:15025072-15024952 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 44-168 |
| Cow position: | chr22:11497532-11497655 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 44-209 |
| Cow position: | chr22:30606894-30607056 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 44-210 |
| Cow position: | chr22:35627386-35627548 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 44-213 |
| Cow position: | chr22:1309696-1309526 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 133, 80 |
| Conread position: | 44-213 |
| Cow position: | chr22:27681759-27681937 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 44-214 |
| Cow position: | chr22:11790021-11790200 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 44-216 |
| Cow position: | chr22:23209602-23209783 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 44-223 |
| Cow position: | chr22:15737272-15737456 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 54, 63 |
| Conread position: | 44-224 |
| Cow position: | chr22:39472119-39471938 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 136, 32 |
| Conread position: | 44-225 |
| Cow position: | chr22:1106105-1106286 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-238 |
| Cow position: | chr22:47820476-47820676 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 136, 62 |
| Conread position: | 45-209 |
| Cow position: | chr22:11767011-11766851 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 82 |
| Conread position: | 45-210 |
| Cow position: | chr22:6149352-6149190 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 45-212 |
| Cow position: | chr22:39446330-39446505 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 45-228 |
| Cow position: | chr22:1326458-1326645 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 131, 51 |
| Conread position: | 46-174 |
| Cow position: | chr22:35578737-35578611 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-209 |
| Cow position: | chr22:9075447-9075619 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 47-214 |
| Cow position: | chr22:24890262-24890423 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 158, 78 |
| Conread position: | 48-212 |
| Cow position: | chr22:16533116-16533285 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 50 |
| Conread position: | 54-174 |
| Cow position: | chr22:18441129-18441249 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-214 |
| Cow position: | chr22:11601081-11601249 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 60-225 |
| Cow position: | chr22:9983774-9983613 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 180-472 |
| Cow position: | chr22:3278411-3278118 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 157, 19 |
Show alignments to all cow chromosomes.