Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-210 |
| Cow position: | chr23:6244597-6244398 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 1-210 |
| Cow position: | chr23:27848995-27849206 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 111 |
| Conread position: | 1-212 |
| Cow position: | chr23:16582911-16582699 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 26, 196 |
| Conread position: | 1-215 |
| Cow position: | chr23:11081255-11081477 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 55 |
| Conread position: | 1-220 |
| Cow position: | chr23:5426432-5426652 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 174 |
| Conread position: | 1-221 |
| Cow position: | chr23:8698419-8698639 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 178 |
| Conread position: | 1-222 |
| Cow position: | chr23:187177-187398 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 132 |
| Conread position: | 1-224 |
| Cow position: | chr23:26986272-26986043 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 16, 58 |
| Conread position: | 1-225 |
| Cow position: | chr23:32621282-32621508 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 189 |
| Conread position: | 2-166 |
| Cow position: | chr23:3204778-3204948 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 2-210 |
| Cow position: | chr23:39267784-39267992 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 12, 120 |
| Conread position: | 7-139 |
| Cow position: | chr23:13674027-13673893 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 8-208 |
| Cow position: | chr23:9226290-9226476 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 12-208 |
| Cow position: | chr23:29330319-29330523 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 13-173 |
| Cow position: | chr23:5436990-5436831 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 13-212 |
| Cow position: | chr23:16647335-16647535 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 13-244 |
| Cow position: | chr23:5436630-5436398 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 167, 189 |
| Conread position: | 14-210 |
| Cow position: | chr23:17597440-17597631 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 162, 108 |
| Conread position: | 21-174 |
| Cow position: | chr23:40501077-40500926 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 21-209 |
| Cow position: | chr23:22238801-22238606 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 21-210 |
| Cow position: | chr23:4003667-4003863 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 145, 186 |
| Conread position: | 21-213 |
| Cow position: | chr23:4979261-4979076 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 21-221 |
| Cow position: | chr23:3234761-3234560 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 87, 160 |
| Conread position: | 22-213 |
| Cow position: | chr23:33232680-33232482 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 140, 76 |
| Conread position: | 22-244 |
| Cow position: | chr23:19565472-19565694 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 138, 34 |
| Conread position: | 23-177 |
| Cow position: | chr23:4343504-4343658 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-213 |
| Cow position: | chr23:27414068-27413879 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 176, 82 |
| Conread position: | 24-222 |
| Cow position: | chr23:28574729-28574924 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 24, 64 |
| Conread position: | 27-222 |
| Cow position: | chr23:35527106-35527309 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 36-243 |
| Cow position: | chr23:28580551-28580341 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 37-174 |
| Cow position: | chr23:9726505-9726368 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-213 |
| Cow position: | chr23:20557808-20557625 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 125, 166 |
| Conread position: | 37-213 |
| Cow position: | chr23:35239388-35239568 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 139, 17 |
| Conread position: | 37-215 |
| Cow position: | chr23:17462626-17462812 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 37-222 |
| Cow position: | chr23:18739428-18739245 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 139 |
| Conread position: | 37-236 |
| Cow position: | chr23:164796-164995 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 121, 144 |
| Conread position: | 38-174 |
| Cow position: | chr23:1701209-1701345 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-213 |
| Cow position: | chr23:1480677-1480849 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 132 |
| Conread position: | 38-215 |
| Cow position: | chr23:35718349-35718530 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 136, 58 |
| Conread position: | 38-221 |
| Cow position: | chr23:12363580-12363405 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 38-221 |
| Cow position: | chr23:22530401-22530223 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 38-222 |
| Cow position: | chr23:534265-534442 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 38-236 |
| Cow position: | chr23:7709828-7710012 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 182, 68 |
| Conread position: | 39-173 |
| Cow position: | chr23:4972805-4972938 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 39-174 |
| Cow position: | chr23:32479979-32479846 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 39-209 |
| Cow position: | chr23:36306607-36306782 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 39-210 |
| Cow position: | chr23:1798149-1798323 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 39-210 |
| Cow position: | chr23:37207194-37207018 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 44-144 |
| Cow position: | chr23:38118001-38118101 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-166 |
| Cow position: | chr23:306566-306688 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-173 |
| Cow position: | chr23:32126349-32126475 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 44-178 |
| Cow position: | chr23:13410712-13410585 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 44-207 |
| Cow position: | chr23:6179502-6179336 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 44-210 |
| Cow position: | chr23:10853089-10853254 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 44-211 |
| Cow position: | chr23:13380753-13380918 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 44-222 |
| Cow position: | chr23:4291398-4291573 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 44-239 |
| Cow position: | chr23:307499-307695 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 45-222 |
| Cow position: | chr23:10675896-10676073 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-178 |
| Cow position: | chr23:40672933-40672801 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-205 |
| Cow position: | chr23:21664350-21664506 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 135, 75 |
| Conread position: | 51-210 |
| Cow position: | chr23:799618-799462 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 51-213 |
| Cow position: | chr23:3270349-3270518 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 56-209 |
| Cow position: | chr23:7471604-7471758 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 75 |
| Conread position: | 57-210 |
| Cow position: | chr23:3890518-3890357 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 40, 56 |
Show alignments to all cow chromosomes.