Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-146 |
| Cow position: | chr27:29693438-29693291 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-164 |
| Cow position: | chr27:15825760-15825925 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-174 |
| Cow position: | chr27:13318014-13318189 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-174 |
| Cow position: | chr27:23452421-23452251 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 125 |
| Conread position: | 1-174 |
| Cow position: | chr27:27740331-27740505 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 72 |
| Conread position: | 1-211 |
| Cow position: | chr27:5553429-5553214 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 2-213 |
| Cow position: | chr27:11435363-11435586 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-222 |
| Cow position: | chr27:29831738-29831971 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 3-222 |
| Cow position: | chr27:19933027-19932804 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-174 |
| Cow position: | chr27:28931848-28932014 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 8-166 |
| Cow position: | chr27:19660883-19660724 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 14-218 |
| Cow position: | chr27:426914-426717 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 20-159 |
| Cow position: | chr27:24709496-24709357 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-174 |
| Cow position: | chr27:26909652-26909800 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 20-230 |
| Cow position: | chr27:24303886-24303666 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 21-174 |
| Cow position: | chr27:15865545-15865398 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 21-174 |
| Cow position: | chr27:16965517-16965363 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 123 |
| Conread position: | 21-208 |
| Cow position: | chr27:27438568-27438762 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 141, 28 |
| Conread position: | 21-210 |
| Cow position: | chr27:18491494-18491313 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 22-213 |
| Cow position: | chr27:11561713-11561524 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 76 |
| Conread position: | 34-214 |
| Cow position: | chr27:10598914-10598725 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 132, 72 |
| Conread position: | 37-173 |
| Cow position: | chr27:232476-232340 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-174 |
| Cow position: | chr27:23148088-23147949 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 37-197 |
| Cow position: | chr27:9977605-9977443 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 61, 86 |
| Conread position: | 37-209 |
| Cow position: | chr27:17908337-17908513 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 143, 35 |
| Conread position: | 37-210 |
| Cow position: | chr27:26118422-26118252 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 136 |
| Conread position: | 37-210 |
| Cow position: | chr27:27827928-27828112 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 37-222 |
| Cow position: | chr27:17995021-17995213 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 38-166 |
| Cow position: | chr27:18813618-18813748 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 38-174 |
| Cow position: | chr27:23060192-23060328 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-178 |
| Cow position: | chr27:22237045-22236906 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 38-213 |
| Cow position: | chr27:6550385-6550200 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 160 |
| Conread position: | 38-213 |
| Cow position: | chr27:15434246-15434073 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 128, 84 |
| Conread position: | 38-213 |
| Cow position: | chr27:20514744-20514566 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 142, 0 |
| Conread position: | 38-214 |
| Cow position: | chr27:8062429-8062600 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 38-255 |
| Cow position: | chr27:26111994-26112208 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 39-173 |
| Cow position: | chr27:10323761-10323633 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 39-174 |
| Cow position: | chr27:30914930-30914795 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-210 |
| Cow position: | chr27:2592462-2592280 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 39-212 |
| Cow position: | chr27:7412313-7412146 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 155, 86 |
| Conread position: | 44-209 |
| Cow position: | chr27:28015817-28015979 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 44-213 |
| Cow position: | chr27:30260977-30261146 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-166 |
| Cow position: | chr27:11208640-11208761 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-170 |
| Cow position: | chr27:26317980-26317855 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 45-174 |
| Cow position: | chr27:31157726-31157598 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 45-209 |
| Cow position: | chr27:11982732-11982892 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 46-174 |
| Cow position: | chr27:22583660-22583531 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 46-222 |
| Cow position: | chr27:19500320-19500505 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 46-247 |
| Cow position: | chr27:9504469-9504263 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 121, 177 |
| Conread position: | 46-247 |
| Cow position: | chr27:11480723-11480920 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 91, 87 |
| Conread position: | 47-222 |
| Cow position: | chr27:11133999-11133830 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 158, 78 |
| Conread position: | 50-212 |
| Cow position: | chr27:20045804-20045638 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 51-210 |
| Cow position: | chr27:18020256-18020414 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 121, 80 |
| Conread position: | 53-222 |
| Cow position: | chr27:28921986-28922152 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 54-210 |
| Cow position: | chr27:21054365-21054201 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 54-215 |
| Cow position: | chr27:27020192-27020356 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 56-174 |
| Cow position: | chr27:27012602-27012484 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.