Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-194 |
| Cow position: | chr28:7557733-7557534 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-207 |
| Cow position: | chr28:8259629-8259841 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-208 |
| Cow position: | chr28:19262586-19262380 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 31, 177 |
| Conread position: | 1-209 |
| Cow position: | chr28:5236603-5236390 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 183 |
| Conread position: | 1-213 |
| Cow position: | chr28:13048282-13048065 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1-215 |
| Cow position: | chr28:17739826-17740035 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1-224 |
| Cow position: | chr28:3445480-3445258 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 1-226 |
| Cow position: | chr28:21868458-21868679 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 127 |
| Conread position: | 3-174 |
| Cow position: | chr28:18608365-18608192 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 8-173 |
| Cow position: | chr28:27218333-27218497 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 8-213 |
| Cow position: | chr28:7644750-7644959 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 54, 72 |
| Conread position: | 8-222 |
| Cow position: | chr28:2077511-2077722 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 8-222 |
| Cow position: | chr28:10615936-10615723 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 168, 114 |
| Conread position: | 13-213 |
| Cow position: | chr28:8787555-8787748 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 53 |
| Conread position: | 14-212 |
| Cow position: | chr28:8396351-8396545 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 162, 108 |
| Conread position: | 14-213 |
| Cow position: | chr28:4013100-4013292 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 14-244 |
| Cow position: | chr28:7350670-7350903 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 166, 111 |
| Conread position: | 20-174 |
| Cow position: | chr28:2821275-2821434 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 20-220 |
| Cow position: | chr28:32014806-32015004 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 21-166 |
| Cow position: | chr28:5630121-5630264 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 21-215 |
| Cow position: | chr28:3011246-3011056 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 21-216 |
| Cow position: | chr28:4884233-4884030 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 31, 108 |
| Conread position: | 22-174 |
| Cow position: | chr28:2523967-2524118 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 30-173 |
| Cow position: | chr28:6301113-6301256 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-213 |
| Cow position: | chr28:11307480-11307297 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 36-213 |
| Cow position: | chr28:16200705-16200520 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 36-224 |
| Cow position: | chr28:2819813-2819996 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 130, 86 |
| Conread position: | 37-166 |
| Cow position: | chr28:19118008-19118137 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-174 |
| Cow position: | chr28:17680661-17680798 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-208 |
| Cow position: | chr28:3726170-3726004 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 83, 93 |
| Conread position: | 37-208 |
| Cow position: | chr28:4881201-4881034 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 143, 88 |
| Conread position: | 37-214 |
| Cow position: | chr28:20281797-20281969 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 143, 39 |
| Conread position: | 37-232 |
| Cow position: | chr28:10053286-10053096 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 70 |
| Conread position: | 38-158 |
| Cow position: | chr28:7697942-7697822 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-174 |
| Cow position: | chr28:21363780-21363916 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-210 |
| Cow position: | chr28:9109256-9109417 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 38-222 |
| Cow position: | chr28:117723-117536 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 38-224 |
| Cow position: | chr28:28765863-28765675 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 126, 166 |
| Conread position: | 38-226 |
| Cow position: | chr28:118649-118841 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 48, 166 |
| Conread position: | 39-178 |
| Cow position: | chr28:11827726-11827865 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 39-213 |
| Cow position: | chr28:5199865-5200047 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 39-213 |
| Cow position: | chr28:21765996-21766175 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 39-221 |
| Cow position: | chr28:9705691-9705874 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 129 |
| Conread position: | 39-222 |
| Cow position: | chr28:12628777-12628956 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 44-166 |
| Cow position: | chr28:4282445-4282324 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 44-166 |
| Cow position: | chr28:8656120-8656001 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 44-173 |
| Cow position: | chr28:4643724-4643598 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 44-205 |
| Cow position: | chr28:4022719-4022883 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 44-210 |
| Cow position: | chr28:8347777-8347951 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 44-222 |
| Cow position: | chr28:11398751-11398574 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 161, 132 |
| Conread position: | 44-258 |
| Cow position: | chr28:13527240-13527453 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 133 |
| Conread position: | 46-166 |
| Cow position: | chr28:4138623-4138502 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 46-212 |
| Cow position: | chr28:34830202-34830375 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 48-213 |
| Cow position: | chr28:6563847-6563685 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 118, 126 |
| Conread position: | 48-214 |
| Cow position: | chr28:11828912-11828738 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 48-221 |
| Cow position: | chr28:21845007-21845179 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 132, 83 |
| Conread position: | 51-174 |
| Cow position: | chr28:21263210-21263327 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 51-220 |
| Cow position: | chr28:14657766-14657932 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 54-174 |
| Cow position: | chr28:3311168-3311048 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-210 |
| Cow position: | chr28:14947773-14947933 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 201-441 |
| Cow position: | chr28:15920460-15920213 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 145, 43 |
| Conread position: | 202-444 |
| Cow position: | chr28:21325802-21326045 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 144, 16 |
Show alignments to all cow chromosomes.