Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-168 |
| Cow position: | chr29:24188071-24187901 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-174 |
| Cow position: | chr29:17109954-17110122 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-209 |
| Cow position: | chr29:17297130-17297340 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-210 |
| Cow position: | chr29:28420750-28420968 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 10, 42 |
| Conread position: | 1-221 |
| Cow position: | chr29:32656427-32656650 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-239 |
| Cow position: | chr29:23637684-23637434 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-204 |
| Cow position: | chr29:15797947-15798157 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 2-205 |
| Cow position: | chr29:15796481-15796685 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 7-197 |
| Cow position: | chr29:20167426-20167621 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 7-214 |
| Cow position: | chr29:4120856-4121070 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 155, 200 |
| Conread position: | 8-213 |
| Cow position: | chr29:19420610-19420417 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 8-215 |
| Cow position: | chr29:41530853-41531059 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 9-174 |
| Cow position: | chr29:16200474-16200309 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-220 |
| Cow position: | chr29:5520480-5520264 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 154, 121 |
| Conread position: | 14-174 |
| Cow position: | chr29:23825201-23825045 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 18-234 |
| Cow position: | chr29:24614358-24614572 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 164 |
| Conread position: | 21-174 |
| Cow position: | chr29:18878465-18878312 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 22-210 |
| Cow position: | chr29:19363728-19363908 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 23-213 |
| Cow position: | chr29:26563805-26563607 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 88 |
| Conread position: | 30-173 |
| Cow position: | chr29:33143329-33143190 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 33-212 |
| Cow position: | chr29:7414529-7414708 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 34-214 |
| Cow position: | chr29:28066516-28066695 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 142, 72 |
| Conread position: | 37-168 |
| Cow position: | chr29:28257173-28257304 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 125, 81 |
| Conread position: | 37-173 |
| Cow position: | chr29:8163797-8163661 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-174 |
| Cow position: | chr29:15947199-15947336 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-196 |
| Cow position: | chr29:38582000-38582159 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 151, 143 |
| Conread position: | 37-205 |
| Cow position: | chr29:30440969-30441134 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 38-174 |
| Cow position: | chr29:29057208-29057343 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 73, 88 |
| Conread position: | 38-214 |
| Cow position: | chr29:26017469-26017290 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 39-189 |
| Cow position: | chr29:21443304-21443151 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 39-201 |
| Cow position: | chr29:23262287-23262131 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 39-213 |
| Cow position: | chr29:20781052-20781224 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 165, 137 |
| Conread position: | 39-214 |
| Cow position: | chr29:2414718-2414540 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 39-215 |
| Cow position: | chr29:43088342-43088511 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 39-222 |
| Cow position: | chr29:19949341-19949517 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 44-168 |
| Cow position: | chr29:24365858-24365735 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 120, 27 |
| Conread position: | 44-171 |
| Cow position: | chr29:42404986-42405114 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 44-174 |
| Cow position: | chr29:4441165-4441038 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 44-174 |
| Cow position: | chr29:23142295-23142165 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-210 |
| Cow position: | chr29:5046692-5046865 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 44-222 |
| Cow position: | chr29:8669398-8669570 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 152, 27 |
| Conread position: | 45-243 |
| Cow position: | chr29:14576899-14577091 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 190, 77 |
| Conread position: | 46-178 |
| Cow position: | chr29:7124859-7124992 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 46-208 |
| Cow position: | chr29:16735265-16735435 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 46-210 |
| Cow position: | chr29:4492010-4491842 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 48-209 |
| Cow position: | chr29:36546739-36546583 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 48-211 |
| Cow position: | chr29:36357169-36357329 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 51-197 |
| Cow position: | chr29:3192869-3192724 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 111, 129 |
| Conread position: | 54-178 |
| Cow position: | chr29:24119451-24119327 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.