Cow genome map

Conread name: rsug05_n17.y1

Conread position: 1-174
Cow position: chr3:2675001-2675176 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 128
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 1-174
Cow position: chr3:11987301-11987472 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 126

Conread position: 1-206
Cow position: chr3:9120817-9121026 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 175, 31

Conread position: 1-207
Cow position: chr3:76268003-76267794 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 30, 126

Conread position: 1-210
Cow position: chr3:15443756-15443549 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 23, 180

Conread position: 1-210
Cow position: chr3:22165443-22165226 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 42

Conread position: 1-210
Cow position: chr3:48900360-48900153 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 31, 172

Conread position: 1-213
Cow position: chr3:3556517-3556728 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 147
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 10, 176

Conread position: 1-214
Cow position: chr3:73335256-73335471 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 15, 103

Conread position: 1-235
Cow position: chr3:35624573-35624338 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 159
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 37, 31

Conread position: 1-242
Cow position: chr3:59604818-59605061 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 173
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 46

Conread position: 1-244
Cow position: chr3:31309382-31309134 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 182
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 29, 209

Conread position: 7-174
Cow position: chr3:48483158-48483325 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 118
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 7-209
Cow position: chr3:53604766-53604557 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 173, 114

Conread position: 7-213
Cow position: chr3:210299-210502 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 165, 0

Conread position: 8-174
Cow position: chr3:15973547-15973714 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 8-178
Cow position: chr3:77171296-77171466 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 8-210
Cow position: chr3:11229384-11229188 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 8-210
Cow position: chr3:59947646-59947856 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 147
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 155, 0

Conread position: 8-216
Cow position: chr3:75050636-75050431 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 158, 44

Conread position: 8-225
Cow position: chr3:2506497-2506284 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 145
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 13-213
Cow position: chr3:47199141-47198946 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 139
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 141, 0

Conread position: 13-263
Cow position: chr3:32376798-32377044 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 164
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 113

Conread position: 14-206
Cow position: chr3:49363096-49363280 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 104, 0

Conread position: 18-207
Cow position: chr3:55730478-55730281 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 158, 0

Conread position: 20-195
Cow position: chr3:11640726-11640905 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 146, 0

Conread position: 20-213
Cow position: chr3:23203238-23203041 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 138
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 146, 56

Conread position: 21-166
Cow position: chr3:61024029-61023884 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 21-173
Cow position: chr3:72391076-72391231 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 21-197
Cow position: chr3:37041413-37041591 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 127
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 159, 97

Conread position: 21-206
Cow position: chr3:3656508-3656699 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 0

Conread position: 21-208
Cow position: chr3:68303308-68303493 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 92, 155

Conread position: 21-208
Cow position: chr3:72342239-72342434 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 139
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 144, 0

Conread position: 21-209
Cow position: chr3:23132175-23131992 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 21-210
Cow position: chr3:9026092-9025898 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 80, 41

Conread position: 21-212
Cow position: chr3:58010836-58010644 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 14, 34

Conread position: 21-220
Cow position: chr3:20043600-20043396 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 138
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 158, 0

Conread position: 21-222
Cow position: chr3:3164116-3163916 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 77, 139

Conread position: 21-224
Cow position: chr3:51150122-51150332 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 97, 0

Conread position: 22-210
Cow position: chr3:52845551-52845732 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 103, 0

Conread position: 22-212
Cow position: chr3:52608177-52608363 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 103, 0

Conread position: 22-222
Cow position: chr3:76168637-76168427 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 158, 0

Conread position: 22-247
Cow position: chr3:55189759-55189523 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 30, 89

Conread position: 31-170
Cow position: chr3:29234677-29234537 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 37-160
Cow position: chr3:38783616-38783738 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 37-166
Cow position: chr3:75238467-75238596 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 37-174
Cow position: chr3:83199521-83199657 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 37-197
Cow position: chr3:17039622-17039785 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 37-199
Cow position: chr3:67942526-67942367 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 144, 0

Conread position: 37-209
Cow position: chr3:27976514-27976342 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 113, 91

Conread position: 37-213
Cow position: chr3:55318887-55318718 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 60, 0

Conread position: 37-213
Cow position: chr3:62186161-62186338 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 88, 142

Conread position: 37-215
Cow position: chr3:65058708-65058881 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 80, 0

Conread position: 37-222
Cow position: chr3:36375530-36375346 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 129, 97

Conread position: 38-178
Cow position: chr3:68624228-68624367 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 38-198
Cow position: chr3:19788819-19788664 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 38-213
Cow position: chr3:17531727-17531553 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 38-213
Cow position: chr3:63069355-63069181 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 97, 148

Conread position: 38-214
Cow position: chr3:76056274-76056097 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 142, 84

Conread position: 38-220
Cow position: chr3:14601693-14601515 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 38-222
Cow position: chr3:30180097-30180275 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 38-225
Cow position: chr3:59317713-59317895 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 78, 48

Conread position: 39-174
Cow position: chr3:2016447-2016576 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 39-205
Cow position: chr3:35802929-35802753 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 39-213
Cow position: chr3:28676208-28676382 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 39-213
Cow position: chr3:54067806-54067980 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 39-231
Cow position: chr3:75966772-75966583 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 53, 89

Conread position: 39-239
Cow position: chr3:38248664-38248860 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 141
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 137

Conread position: 39-240
Cow position: chr3:59649270-59649472 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 146
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 127, 73

Conread position: 43-224
Cow position: chr3:8523138-8522963 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 44, 0

Conread position: 44-166
Cow position: chr3:11281783-11281905 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 44-173
Cow position: chr3:39996871-39996748 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 44-174
Cow position: chr3:51609169-51609040 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 44-210
Cow position: chr3:3453596-3453759 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 131, 0

Conread position: 44-210
Cow position: chr3:60370999-60371172 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 126, 0

Conread position: 44-217
Cow position: chr3:3011163-3011340 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 107

Conread position: 44-236
Cow position: chr3:56678332-56678140 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 136, 48

Conread position: 44-255
Cow position: chr3:25037975-25037768 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 165, 60

Conread position: 45-213
Cow position: chr3:76300789-76300954 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 45-214
Cow position: chr3:70431448-70431621 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 95, 24

Conread position: 45-221
Cow position: chr3:84807310-84807136 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 161, 128

Conread position: 46-165
Cow position: chr3:62789936-62789815 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 46-206
Cow position: chr3:29946406-29946570 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 135, 60

Conread position: 46-208
Cow position: chr3:621453-621616 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 96, 133

Conread position: 46-208
Cow position: chr3:24468366-24468196 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 120, 0

Conread position: 46-221
Cow position: chr3:42483945-42484128 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 141
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 0

Conread position: 46-222
Cow position: chr3:4071752-4071579 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 159, 32

Conread position: 46-223
Cow position: chr3:18479279-18479106 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 46-224
Cow position: chr3:79271692-79271503 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 144
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 120, 99

Conread position: 46-225
Cow position: chr3:9663153-9662977 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 124, 0

Conread position: 46-244
Cow position: chr3:78443551-78443347 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 48-209
Cow position: chr3:22078096-22078254 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 127, 0

Conread position: 52-210
Cow position: chr3:36412061-36411901 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 128, 0

Conread position: 52-223
Cow position: chr3:61171344-61171168 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 85, 0

Conread position: 52-229
Cow position: chr3:43389103-43388929 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 123, 0

Conread position: 54-197
Cow position: chr3:68565848-68565987 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 122, 18

Conread position: 204-452
Cow position: chr3:5047292-5047039 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 172
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 134, 24

Conread position: 204-473
Cow position: chr3:56396006-56396280 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 58

Conread position: 205-475
Cow position: chr3:7158839-7158565 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 186
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 141, 23

Conread position: 205-482
Cow position: chr3:7168687-7168969 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 190
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 144, 23

Conread position: 279-490
Cow position: chr3:6660188-6660405 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 69, 0

Show alignments to all cow chromosomes.