Cow genome map
| Conread name: | rsug05_n17.y1 |
| Conread position: | 1-166 |
| Cow position: | chr6:48435870-48436032 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-168 |
| Cow position: | chr6:10039759-10039929 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-172 |
| Cow position: | chr6:66259765-66259944 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-173 |
| Cow position: | chr6:21475763-21475934 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 99 |
| Conread position: | 1-213 |
| Cow position: | chr6:50771323-50771106 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 179, 31 |
| Conread position: | 1-222 |
| Cow position: | chr6:22876895-22876672 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 31 |
| Conread position: | 1-223 |
| Cow position: | chr6:24468360-24468145 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 123 |
| Conread position: | 1-224 |
| Cow position: | chr6:5330448-5330678 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 20, 102 |
| Conread position: | 2-208 |
| Cow position: | chr6:12964889-12965104 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 7-247 |
| Cow position: | chr6:15937813-15937578 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 170 |
| Conread position: | 8-166 |
| Cow position: | chr6:39093794-39093945 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 8-200 |
| Cow position: | chr6:50984267-50984460 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 118, 90 |
| Conread position: | 8-224 |
| Cow position: | chr6:15974477-15974261 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 171, 23 |
| Conread position: | 13-166 |
| Cow position: | chr6:69153459-69153612 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-207 |
| Cow position: | chr6:58304464-58304662 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 153, 97 |
| Conread position: | 14-213 |
| Cow position: | chr6:19264448-19264251 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 21-160 |
| Cow position: | chr6:58076451-58076590 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-178 |
| Cow position: | chr6:50883618-50883466 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 21-213 |
| Cow position: | chr6:21052392-21052192 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 95, 187 |
| Conread position: | 21-213 |
| Cow position: | chr6:51530130-51529933 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 21-233 |
| Cow position: | chr6:33302452-33302668 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 90, 111 |
| Conread position: | 22-213 |
| Cow position: | chr6:38640292-38640486 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 144, 100 |
| Conread position: | 22-232 |
| Cow position: | chr6:21184164-21183958 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 34-213 |
| Cow position: | chr6:7801326-7801145 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 132, 88 |
| Conread position: | 34-215 |
| Cow position: | chr6:53811653-53811833 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 139 |
| Conread position: | 35-209 |
| Cow position: | chr6:28559609-28559780 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 58, 84 |
| Conread position: | 36-215 |
| Cow position: | chr6:8365884-8366065 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 36-222 |
| Cow position: | chr6:62805715-62805898 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 37-174 |
| Cow position: | chr6:5445741-5445876 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 37-174 |
| Cow position: | chr6:30895918-30895782 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 37-210 |
| Cow position: | chr6:35985063-35984882 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 37-215 |
| Cow position: | chr6:62437488-62437673 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 129, 170 |
| Conread position: | 37-221 |
| Cow position: | chr6:14914162-14913979 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 65, 61 |
| Conread position: | 37-221 |
| Cow position: | chr6:21004750-21004932 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 137 |
| Conread position: | 37-223 |
| Cow position: | chr6:43906610-43906424 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-265 |
| Cow position: | chr6:54365254-54365034 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 38-166 |
| Cow position: | chr6:10176227-10176099 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-166 |
| Cow position: | chr6:21467193-21467065 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-173 |
| Cow position: | chr6:16411685-16411820 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-174 |
| Cow position: | chr6:10105904-10105772 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 38-174 |
| Cow position: | chr6:15058451-15058583 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 38-174 |
| Cow position: | chr6:48379539-48379403 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 38-197 |
| Cow position: | chr6:35342105-35341948 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 137, 58 |
| Conread position: | 38-205 |
| Cow position: | chr6:40032265-40032426 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 120, 87 |
| Conread position: | 38-222 |
| Cow position: | chr6:44544074-44543893 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 167, 72 |
| Conread position: | 38-222 |
| Cow position: | chr6:64432013-64432192 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 138, 86 |
| Conread position: | 38-225 |
| Cow position: | chr6:56986576-56986392 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 39-197 |
| Cow position: | chr6:1103663-1103506 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 53, 59 |
| Conread position: | 39-222 |
| Cow position: | chr6:53145607-53145418 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 140, 168 |
| Conread position: | 44-174 |
| Cow position: | chr6:8187109-8186979 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-174 |
| Cow position: | chr6:21175418-21175542 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 44-174 |
| Cow position: | chr6:36225189-36225318 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 44-207 |
| Cow position: | chr6:57079504-57079664 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 44-209 |
| Cow position: | chr6:33509867-33510029 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 44-213 |
| Cow position: | chr6:18447437-18447268 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-213 |
| Cow position: | chr6:54840427-54840245 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 44-222 |
| Cow position: | chr6:49685898-49686076 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-225 |
| Cow position: | chr6:16627815-16627995 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 122, 81 |
| Conread position: | 44-225 |
| Cow position: | chr6:62224502-62224685 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 107 |
| Conread position: | 44-237 |
| Cow position: | chr6:26408424-26408235 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 130 |
| Conread position: | 45-202 |
| Cow position: | chr6:32453467-32453622 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 41 |
| Conread position: | 45-221 |
| Cow position: | chr6:53932765-53932589 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 121, 61 |
| Conread position: | 46-166 |
| Cow position: | chr6:2153516-2153396 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-209 |
| Cow position: | chr6:16137688-16137516 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 46-210 |
| Cow position: | chr6:66293567-66293735 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 46-213 |
| Cow position: | chr6:35727932-35728103 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 66, 158 |
| Conread position: | 46-221 |
| Cow position: | chr6:36809122-36808940 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 120, 161 |
| Conread position: | 46-225 |
| Cow position: | chr6:5095459-5095276 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 130, 158 |
| Conread position: | 47-206 |
| Cow position: | chr6:8600083-8600255 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 47-208 |
| Cow position: | chr6:3936866-3937026 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 83, 130 |
| Conread position: | 51-174 |
| Cow position: | chr6:31928724-31928847 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 52-215 |
| Cow position: | chr6:12669184-12669344 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 52-222 |
| Cow position: | chr6:54828234-54828056 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 55-213 |
| Cow position: | chr6:3952610-3952778 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 218-472 |
| Cow position: | chr6:3148951-3149211 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 218-472 |
| Cow position: | chr6:59919331-59919078 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 151, 26 |
Show alignments to all cow chromosomes.