Cow genome map

Conread name: rsug05_n17.y1

Conread position: 1-166
Cow position: chr8:17046754-17046588 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 1-173
Cow position: chr8:34402302-34402476 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 1-173
Cow position: chr8:45859815-45859989 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 1-174
Cow position: chr8:17199425-17199251 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 97

Conread position: 1-174
Cow position: chr8:36249411-36249239 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 121

Conread position: 1-197
Cow position: chr8:32278341-32278142 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 29, 60

Conread position: 1-209
Cow position: chr8:24513137-24512922 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 165, 20

Conread position: 1-213
Cow position: chr8:35827797-35827576 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 150
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 1-213
Cow position: chr8:55884980-55885189 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 151
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 123

Conread position: 1-222
Cow position: chr8:38843620-38843400 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 147
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 30, 176

Conread position: 1-229
Cow position: chr8:35456835-35456605 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 2-170
Cow position: chr8:35580627-35580461 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 14, 122

Conread position: 2-222
Cow position: chr8:16413802-16413577 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 155
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 109, 29

Conread position: 3-209
Cow position: chr8:3887341-3887552 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 202

Conread position: 3-221
Cow position: chr8:35817110-35816892 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 28, 109

Conread position: 6-220
Cow position: chr8:52197443-52197231 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 80, 0

Conread position: 8-165
Cow position: chr8:15394844-15394688 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 124, 38

Conread position: 8-174
Cow position: chr8:522412-522246 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 8-174
Cow position: chr8:21324502-21324337 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 117
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 8-197
Cow position: chr8:6477863-6478055 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 168, 111

Conread position: 8-208
Cow position: chr8:47057648-47057442 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 172, 103

Conread position: 8-213
Cow position: chr8:55725752-55725540 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 158, 44

Conread position: 8-215
Cow position: chr8:55089833-55089628 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 163, 102

Conread position: 8-222
Cow position: chr8:51443685-51443462 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 74, 201

Conread position: 13-178
Cow position: chr8:676295-676129 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 116
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 13-208
Cow position: chr8:5477830-5477632 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 167, 112

Conread position: 13-221
Cow position: chr8:37148331-37148536 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 144
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 166, 0

Conread position: 13-222
Cow position: chr8:6795403-6795612 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 79, 18

Conread position: 14-213
Cow position: chr8:61848705-61848512 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 20-166
Cow position: chr8:5672126-5671981 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 114, 38

Conread position: 20-200
Cow position: chr8:39487609-39487425 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 120, 76

Conread position: 20-229
Cow position: chr8:49542910-49543115 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 193, 111

Conread position: 21-160
Cow position: chr8:8283271-8283132 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 21-166
Cow position: chr8:3423033-3423177 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 89, 0

Conread position: 21-197
Cow position: chr8:13479015-13479198 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 21-209
Cow position: chr8:21600475-21600675 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 114, 0

Conread position: 21-213
Cow position: chr8:5665665-5665460 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 156
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 77, 0

Conread position: 21-214
Cow position: chr8:8323841-8323650 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 76, 81

Conread position: 21-247
Cow position: chr8:10832404-10832179 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 111, 7

Conread position: 22-222
Cow position: chr8:49305720-49305524 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 28-210
Cow position: chr8:27033807-27033993 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 148, 134

Conread position: 36-224
Cow position: chr8:26625912-26626104 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 162, 0

Conread position: 37-174
Cow position: chr8:16144175-16144312 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 37-174
Cow position: chr8:61845505-61845370 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 37-209
Cow position: chr8:37292045-37291875 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 79, 136

Conread position: 37-213
Cow position: chr8:20926586-20926411 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 88, 140

Conread position: 37-215
Cow position: chr8:35534240-35534060 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 126
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 141, 165

Conread position: 37-225
Cow position: chr8:20783219-20783026 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 143, 97

Conread position: 37-225
Cow position: chr8:34092808-34093007 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 77, 179

Conread position: 38-174
Cow position: chr8:39968236-39968102 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 38-178
Cow position: chr8:8097221-8097081 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 38-208
Cow position: chr8:29173255-29173428 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 139, 80

Conread position: 38-210
Cow position: chr8:24363592-24363414 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 117, 11

Conread position: 38-213
Cow position: chr8:17179988-17179819 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 158, 52

Conread position: 38-247
Cow position: chr8:40696920-40697129 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 143
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 86, 145

Conread position: 39-166
Cow position: chr8:1297557-1297684 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 39-174
Cow position: chr8:6224390-6224260 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 0

Conread position: 39-207
Cow position: chr8:1651637-1651814 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 125, 0

Conread position: 39-210
Cow position: chr8:27138748-27138575 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 127, 80

Conread position: 39-210
Cow position: chr8:59056253-59056085 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 158, 142

Conread position: 39-227
Cow position: chr8:46964782-46964970 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 126
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 39-246
Cow position: chr8:6184192-6183986 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 155, 133

Conread position: 39-252
Cow position: chr8:3821937-3821731 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 43-222
Cow position: chr8:28383036-28382860 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 132, 0

Conread position: 44-166
Cow position: chr8:935757-935877 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 99, 0

Conread position: 44-174
Cow position: chr8:1999681-1999811 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 44-174
Cow position: chr8:39592640-39592770 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 44-209
Cow position: chr8:18869933-18870095 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 131, 0

Conread position: 44-209
Cow position: chr8:37571652-37571492 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 118
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 75, 0

Conread position: 44-210
Cow position: chr8:8767086-8766910 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 44-213
Cow position: chr8:37298529-37298693 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 122, 54

Conread position: 44-221
Cow position: chr8:31767983-31767813 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 168, 78

Conread position: 44-221
Cow position: chr8:54306406-54306576 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 44-222
Cow position: chr8:31902634-31902466 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 44-224
Cow position: chr8:5730084-5730256 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 44-228
Cow position: chr8:50281928-50282115 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 128
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 136, 0

Conread position: 45-222
Cow position: chr8:38665591-38665775 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 121, 0

Conread position: 46-210
Cow position: chr8:9814947-9815116 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 46-210
Cow position: chr8:26881774-26881604 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 134, 79

Conread position: 46-211
Cow position: chr8:40743166-40742994 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 46-222
Cow position: chr8:28322024-28322208 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 63, 50

Conread position: 46-225
Cow position: chr8:9168763-9168587 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 46-225
Cow position: chr8:20105820-20105644 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 129, 0

Conread position: 47-209
Cow position: chr8:38894067-38894233 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 63, 135

Conread position: 48-213
Cow position: chr8:12105603-12105775 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 124
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 124, 0

Conread position: 51-208
Cow position: chr8:4897012-4897169 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 51-210
Cow position: chr8:21917281-21917120 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 129, 98

Conread position: 51-213
Cow position: chr8:21058028-21057869 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 115, 32

Conread position: 51-222
Cow position: chr8:14047368-14047536 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 47, 56

Conread position: 51-222
Cow position: chr8:51511798-51511622 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 125, 0

Conread position: 51-224
Cow position: chr8:4722872-4723042 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 132, 0

Conread position: 51-237
Cow position: chr8:26305807-26305624 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 12

Conread position: 51-238
Cow position: chr8:36471380-36471567 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 128
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 71, 128

Conread position: 54-215
Cow position: chr8:32332412-32332241 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 126, 0

Conread position: 54-222
Cow position: chr8:27731099-27731264 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 126, 0

Conread position: 54-223
Cow position: chr8:31615222-31615400 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 56-214
Cow position: chr8:8924276-8924115 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 126, 112

Conread position: 57-194
Cow position: chr8:24871819-24871682 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 123, 130

Conread position: 228-490
Cow position: chr8:2208345-2208603 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 110, 37

Conread position: 228-490
Cow position: chr8:2213494-2213752 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 110, 37

Show alignments to all cow chromosomes.