Cow genome map

Conread name: rtes07_h2r1.y1

Conread position: 1-233
Cow position: chr1:88532869-88532641 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 200, 131

Conread position: 1-398
Cow position: chr1:82408671-82408261 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 59

Conread position: 1-489
Cow position: chr1:101760408-101760904 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 319
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 63, 57

Conread position: 1-502
Cow position: chr1:42177128-42176646 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 9

Conread position: 1-502
Cow position: chr1:82346800-82346297 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 19

Conread position: 5-161
Cow position: chr1:84777542-84777699 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 117, 0

Conread position: 10-227
Cow position: chr1:78359597-78359812 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 109, 139

Conread position: 10-396
Cow position: chr1:54366521-54366143 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 46

Conread position: 10-501
Cow position: chr1:86608449-86608943 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 57

Conread position: 10-502
Cow position: chr1:76704102-76703628 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 110

Conread position: 11-501
Cow position: chr1:5318022-5318505 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 47

Conread position: 12-229
Cow position: chr1:72119165-72119384 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 159
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 110, 0

Conread position: 12-397
Cow position: chr1:23049907-23050281 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 106

Conread position: 12-502
Cow position: chr1:20988015-20988507 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 17

Conread position: 13-166
Cow position: chr1:13879662-13879514 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 110, 0

Conread position: 13-398
Cow position: chr1:84479070-84479426 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 59

Conread position: 13-502
Cow position: chr1:25887883-25887397 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 331

Conread position: 16-335
Cow position: chr1:69059690-69060010 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 171

Conread position: 16-502
Cow position: chr1:67903172-67902678 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 329
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 29

Conread position: 16-502
Cow position: chr1:72134686-72135179 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 32

Conread position: 17-396
Cow position: chr1:29032527-29032908 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 139

Conread position: 18-256
Cow position: chr1:31594214-31594452 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 105, 16

Conread position: 20-489
Cow position: chr1:98662021-98661564 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 49

Conread position: 27-502
Cow position: chr1:58180484-58180021 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 54

Conread position: 48-354
Cow position: chr1:69288263-69287952 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 58-335
Cow position: chr1:52323192-52323474 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 197
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 64, 9

Conread position: 62-326
Cow position: chr1:89478488-89478754 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 60, 206

Conread position: 83-487
Cow position: chr1:20396739-20397137 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 273
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 12, 55

Conread position: 92-501
Cow position: chr1:61732386-61732799 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 288
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 31, 91

Conread position: 136-501
Cow position: chr1:53046573-53046204 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 272

Conread position: 137-488
Cow position: chr1:49974814-49974464 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 232
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 58, 33

Conread position: 139-497
Cow position: chr1:7145338-7144981 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 232
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 91

Conread position: 139-502
Cow position: chr1:101149229-101149581 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 240
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 90, 63

Conread position: 142-283
Cow position: chr1:102555184-102555331 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 143-502
Cow position: chr1:34688734-34689090 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 247
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 61, 89

Conread position: 146-488
Cow position: chr1:55324148-55323795 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 248
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 8, 201

Conread position: 151-321
Cow position: chr1:13878362-13878191 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 102

Conread position: 151-502
Cow position: chr1:56194548-56194193 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 238
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 24, 185

Conread position: 152-500
Cow position: chr1:63500842-63501197 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 235
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 15, 23

Conread position: 158-359
Cow position: chr1:28722213-28722420 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 44, 174

Conread position: 158-502
Cow position: chr1:33711458-33711799 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 225
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 189

Conread position: 168-315
Cow position: chr1:53364101-53364250 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 39, 144

Conread position: 169-488
Cow position: chr1:17942423-17942088 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 224
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 34, 250

Conread position: 172-502
Cow position: chr1:3934739-3934415 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 218
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 23, 153

Conread position: 174-488
Cow position: chr1:57367725-57367408 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 214
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 21, 170

Conread position: 207-502
Cow position: chr1:37420531-37420233 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 19, 146

Show alignments to all cow chromosomes.