Cow genome map
| Conread name: | rtes07_h2r1.y1 |
| Conread position: | 1-500 |
| Cow position: | chr5:23227279-23227774 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 101 |
| Conread position: | 1-502 |
| Cow position: | chr5:34167089-34167591 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 22 |
| Conread position: | 10-500 |
| Cow position: | chr5:23756531-23756060 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 30 |
| Conread position: | 10-502 |
| Cow position: | chr5:27000215-27000717 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 165 |
| Conread position: | 11-460 |
| Cow position: | chr5:7503379-7502911 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 263 |
| Conread position: | 12-397 |
| Cow position: | chr5:26090825-26090438 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 104, 70 |
| Conread position: | 12-452 |
| Cow position: | chr5:52432861-52433308 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 123 |
| Conread position: | 12-501 |
| Cow position: | chr5:27683692-27683230 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 326 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 108, 187 |
| Conread position: | 16-498 |
| Cow position: | chr5:24151104-24151591 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 13 |
| Conread position: | 16-498 |
| Cow position: | chr5:25001860-25001405 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 114 |
| Conread position: | 23-502 |
| Cow position: | chr5:26070791-26070336 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 59 |
| Conread position: | 32-502 |
| Cow position: | chr5:58090752-58090310 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 44-500 |
| Cow position: | chr5:27488091-27488545 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 83 |
| Conread position: | 45-483 |
| Cow position: | chr5:51320197-51319777 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 203 |
| Conread position: | 49-502 |
| Cow position: | chr5:58746952-58747407 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 58-229 |
| Cow position: | chr5:6518926-6519097 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 64, 105 |
| Conread position: | 58-488 |
| Cow position: | chr5:46631331-46630912 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 146 |
| Conread position: | 58-502 |
| Cow position: | chr5:23688411-23687955 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 249 |
| Conread position: | 70-488 |
| Cow position: | chr5:27060991-27060574 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 134 |
| Conread position: | 88-316 |
| Cow position: | chr5:47072917-47073150 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 31, 21 |
| Conread position: | 88-487 |
| Cow position: | chr5:14659997-14659588 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 37, 67 |
| Conread position: | 88-492 |
| Cow position: | chr5:60899816-60900215 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 120-446 |
| Cow position: | chr5:29123898-29123568 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 81, 7 |
| Conread position: | 139-501 |
| Cow position: | chr5:4068146-4068505 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 139-502 |
| Cow position: | chr5:2430979-2430616 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 140-489 |
| Cow position: | chr5:7370107-7369761 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 38, 27 |
| Conread position: | 144-502 |
| Cow position: | chr5:26768975-26769329 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 171 |
| Conread position: | 146-502 |
| Cow position: | chr5:12682349-12681985 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 241 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 9, 266 |
| Conread position: | 150-488 |
| Cow position: | chr5:7273032-7273368 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 45, 88 |
| Conread position: | 151-488 |
| Cow position: | chr5:41530413-41530068 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 21, 156 |
| Conread position: | 152-488 |
| Cow position: | chr5:61274006-61273659 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 51, 242 |
| Conread position: | 158-380 |
| Cow position: | chr5:55150100-55149876 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 45, 100 |
| Conread position: | 158-488 |
| Cow position: | chr5:41963761-41963430 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 162-498 |
| Cow position: | chr5:56858529-56858190 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 154 |
| Conread position: | 174-502 |
| Cow position: | chr5:10917989-10918313 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 170 |
| Conread position: | 174-502 |
| Cow position: | chr5:24097840-24098163 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 174-502 |
| Cow position: | chr5:34695771-34696100 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 170 |
| Conread position: | 175-485 |
| Cow position: | chr5:49120091-49119779 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 178-485 |
| Cow position: | chr5:29456810-29457121 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 5, 210 |
| Conread position: | 178-502 |
| Cow position: | chr5:76124357-76124035 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 116 |
| Conread position: | 204-502 |
| Cow position: | chr5:54619702-54619989 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 23, 56 |
| Conread position: | 234-500 |
| Cow position: | chr5:30088458-30088192 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 169 |
| Conread position: | 280-502 |
| Cow position: | chr5:26095042-26095259 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.