Cow genome map
| Conread name: | rthg05_i6.y1 |
| Conread position: | 4-281 |
| Cow position: | chrX:12077710-12077982 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 109, 60 |
| Conread position: | 5-388 |
| Cow position: | chrX:42043248-42042874 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 180, 8 |
| Conread position: | 6-278 |
| Cow position: | chrX:37945131-37944873 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 180, 46 |
| Conread position: | 6-278 |
| Cow position: | chrX:37950816-37951073 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 180, 46 |
| Conread position: | 6-351 |
| Cow position: | chrX:14217735-14217392 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 179, 29 |
| Conread position: | 12-287 |
| Cow position: | chrX:10823737-10823471 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 173, 58 |
| Conread position: | 12-316 |
| Cow position: | chrX:24764985-24764686 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 173, 34 |
| Conread position: | 12-490 |
| Cow position: | chrX:10994180-10994661 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 308 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 175, 52 |
| Conread position: | 13-301 |
| Cow position: | chrX:18920036-18920318 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 20, 40 |
| Conread position: | 13-388 |
| Cow position: | chrX:5321320-5320951 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 172, 53 |
| Conread position: | 13-402 |
| Cow position: | chrX:24770463-24770080 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 168, 51 |
| Conread position: | 13-418 |
| Cow position: | chrX:2560556-2560156 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 172, 32 |
| Conread position: | 13-418 |
| Cow position: | chrX:9010725-9011125 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 161, 32 |
| Conread position: | 13-453 |
| Cow position: | chrX:2578813-2579249 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 287 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 161, 32 |
| Conread position: | 13-453 |
| Cow position: | chrX:5333040-5332603 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 172, 32 |
| Conread position: | 13-455 |
| Cow position: | chrX:4327293-4326861 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 172, 33 |
| Conread position: | 13-490 |
| Cow position: | chrX:387530-388001 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 174, 46 |
| Conread position: | 13-490 |
| Cow position: | chrX:23327407-23326935 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 33 |
| Conread position: | 13-515 |
| Cow position: | chrX:21729712-21729223 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 315 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 266, 51 |
| Conread position: | 14-388 |
| Cow position: | chrX:1013481-1013845 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 110, 38 |
| Conread position: | 14-402 |
| Cow position: | chrX:48856140-48855780 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 21-373 |
| Cow position: | chrX:23586047-23586396 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 166, 31 |
| Conread position: | 44-395 |
| Cow position: | chrX:30540052-30539709 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 142, 10 |
| Conread position: | 46-362 |
| Cow position: | chrX:17986360-17986043 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 57-490 |
| Cow position: | chrX:17488203-17487771 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 277 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 128, 7 |
| Conread position: | 68-388 |
| Cow position: | chrX:7754348-7754668 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 108, 98 |
| Conread position: | 68-418 |
| Cow position: | chrX:5298799-5298449 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 119, 154 |
| Conread position: | 68-418 |
| Cow position: | chrX:12144540-12144890 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 117, 168 |
| Conread position: | 68-440 |
| Cow position: | chrX:39697210-39697579 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 117, 145 |
| Conread position: | 68-453 |
| Cow position: | chrX:5426531-5426919 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 119, 168 |
| Conread position: | 68-453 |
| Cow position: | chrX:15622090-15621703 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 106, 154 |
| Conread position: | 68-453 |
| Cow position: | chrX:23453610-23453224 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 122, 107 |
| Conread position: | 68-453 |
| Cow position: | chrX:37814592-37814979 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 117, 152 |
| Conread position: | 68-453 |
| Cow position: | chrX:37851587-37851966 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 215, 113 |
| Conread position: | 68-490 |
| Cow position: | chrX:22492478-22492903 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 274 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 109, 145 |
| Conread position: | 71-453 |
| Cow position: | chrX:5354855-5354472 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 10 |
| Conread position: | 72-395 |
| Cow position: | chrX:31524239-31524562 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 113, 42 |
| Conread position: | 73-450 |
| Cow position: | chrX:13136902-13136534 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 79, 106 |
| Conread position: | 75-372 |
| Cow position: | chrX:2226382-2226689 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 144, 112 |
| Conread position: | 76-388 |
| Cow position: | chrX:39713002-39713313 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 109, 158 |
| Conread position: | 76-403 |
| Cow position: | chrX:11113693-11113368 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 77-490 |
| Cow position: | chrX:37674509-37674100 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 285 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 109, 22 |
| Conread position: | 88-402 |
| Cow position: | chrX:2606884-2607195 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 97, 13 |
| Conread position: | 91-402 |
| Cow position: | chrX:18276991-18277310 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 94, 125 |
| Conread position: | 101-490 |
| Cow position: | chrX:39765037-39765430 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 84, 216 |
| Conread position: | 126-451 |
| Cow position: | chrX:36908458-36908140 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 129-443 |
| Cow position: | chrX:36546293-36545980 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 54, 84 |
| Conread position: | 173-482 |
| Cow position: | chrX:17523681-17523366 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 175-486 |
| Cow position: | chrX:22963971-22963661 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 10, 50 |
| Conread position: | 190-490 |
| Cow position: | chrX:25449054-25449353 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 212-481 |
| Cow position: | chrX:26877774-26878048 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 49, 23 |
Show alignments to all cow chromosomes.