Cow genome map

Conread name: rtra01_c16r1.y1

Conread position: 1-415
Cow position: chr1:98658554-98658159 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 286
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 190, 56

Conread position: 1-431
Cow position: chr1:3384591-3384160 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 53

Conread position: 1-431
Cow position: chr1:57365007-57364564 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 13

Conread position: 1-431
Cow position: chr1:76620136-76619700 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 73

Conread position: 1-431
Cow position: chr1:81777788-81778225 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 128

Conread position: 1-431
Cow position: chr1:99914790-99915214 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 105

Conread position: 11-373
Cow position: chr1:89733154-89732799 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 227
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 181, 36

Conread position: 13-429
Cow position: chr1:25551317-25551747 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 49

Conread position: 14-319
Cow position: chr1:5319737-5320042 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 5, 82

Conread position: 15-428
Cow position: chr1:87969675-87970084 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 263
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 178, 20

Conread position: 15-431
Cow position: chr1:30074229-30074649 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 54

Conread position: 15-431
Cow position: chr1:67909907-67910326 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 15-431
Cow position: chr1:69404362-69404779 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 16-431
Cow position: chr1:79455598-79455176 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 46

Conread position: 18-431
Cow position: chr1:33713427-33713860 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 29

Conread position: 19-398
Cow position: chr1:50248342-50247961 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 70

Conread position: 19-431
Cow position: chr1:61541653-61542054 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 268
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 20, 78

Conread position: 20-431
Cow position: chr1:42737798-42738207 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 26

Conread position: 36-431
Cow position: chr1:33552308-33552716 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 22

Conread position: 37-431
Cow position: chr1:3933876-3933481 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 20

Conread position: 37-431
Cow position: chr1:26517509-26517110 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr1:62243273-62242874 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr1:72185500-72185097 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr1:72984854-72985229 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 278
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr1:74285296-74284900 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 20

Conread position: 37-431
Cow position: chr1:91891739-91891342 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 54-431
Cow position: chr1:28874460-28874847 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 20

Conread position: 82-431
Cow position: chr1:24442939-24442581 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 14

Conread position: 82-431
Cow position: chr1:55778011-55778365 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 14

Conread position: 82-431
Cow position: chr1:65387738-65388091 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 14

Conread position: 82-431
Cow position: chr1:93855936-93856291 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 14

Conread position: 85-431
Cow position: chr1:73069637-73069281 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 11

Conread position: 87-318
Cow position: chr1:80445578-80445819 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 182
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 69, 9

Conread position: 87-431
Cow position: chr1:52357832-52357480 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 48

Conread position: 90-431
Cow position: chr1:56724572-56724923 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 298

Conread position: 92-346
Cow position: chr1:86595062-86594798 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 87

Conread position: 96-430
Cow position: chr1:77923142-77923486 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 293

Conread position: 100-398
Cow position: chr1:29412742-29412450 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 59

Conread position: 106-429
Cow position: chr1:12060759-12060430 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 106-431
Cow position: chr1:32566477-32566152 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 12

Conread position: 109-427
Cow position: chr1:94661120-94661444 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 281

Conread position: 110-372
Cow position: chr1:72945194-72945455 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 170
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 69, 49

Conread position: 110-403
Cow position: chr1:34694132-34694440 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 175

Conread position: 110-403
Cow position: chr1:55320623-55320330 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 90

Conread position: 110-428
Cow position: chr1:61590747-61590416 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 222
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 47, 76

Conread position: 110-430
Cow position: chr1:50210393-50210064 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 277

Conread position: 110-431
Cow position: chr1:24652715-24653043 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 292

Conread position: 110-431
Cow position: chr1:82367225-82367539 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 47, 65

Conread position: 111-406
Cow position: chr1:31401999-31401720 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 208
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 81, 48

Conread position: 112-282
Cow position: chr1:5356579-5356759 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 118

Conread position: 112-429
Cow position: chr1:55275579-55275254 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 222

Conread position: 112-429
Cow position: chr1:82565564-82565890 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 275

Conread position: 112-430
Cow position: chr1:17011284-17010960 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 121

Conread position: 112-430
Cow position: chr1:33852720-33853047 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 305

Conread position: 112-430
Cow position: chr1:40056555-40056882 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 275

Conread position: 112-430
Cow position: chr1:59207628-59207301 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 294

Conread position: 112-430
Cow position: chr1:67002609-67002931 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 132

Conread position: 112-430
Cow position: chr1:71561294-71560967 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 275

Conread position: 112-430
Cow position: chr1:85793132-85793459 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 275

Conread position: 112-430
Cow position: chr1:86546686-86546359 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 70

Conread position: 112-431
Cow position: chr1:26584551-26584878 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 215

Conread position: 112-431
Cow position: chr1:30533569-30533243 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 49

Conread position: 112-431
Cow position: chr1:40683291-40682963 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 288

Conread position: 112-431
Cow position: chr1:63604320-63603992 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 283

Conread position: 112-431
Cow position: chr1:76750522-76750193 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 282

Conread position: 116-261
Cow position: chr1:101013013-101012857 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 118-374
Cow position: chr1:11859300-11859039 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 11

Conread position: 120-429
Cow position: chr1:22619204-22618896 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 259

Conread position: 121-353
Cow position: chr1:77115211-77114960 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 38, 0

Conread position: 121-427
Cow position: chr1:18240765-18240458 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 110

Conread position: 121-429
Cow position: chr1:29035760-29036075 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 173

Conread position: 121-431
Cow position: chr1:21088892-21089210 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 60

Conread position: 121-431
Cow position: chr1:48248372-48248682 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 80

Conread position: 121-431
Cow position: chr1:72082224-72082535 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 38

Conread position: 121-431
Cow position: chr1:77463117-77463420 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 65, 109

Conread position: 121-431
Cow position: chr1:79635532-79635220 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 132

Conread position: 121-431
Cow position: chr1:81862526-81862204 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 269

Conread position: 121-431
Cow position: chr1:82922698-82922385 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 50

Conread position: 122-431
Cow position: chr1:33897721-33898039 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 265

Conread position: 122-431
Cow position: chr1:91900482-91900801 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 267

Conread position: 136-351
Cow position: chr1:53365022-53365237 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 65

Conread position: 136-431
Cow position: chr1:18964894-18964589 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 252

Conread position: 151-431
Cow position: chr1:25053787-25054066 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 256

Conread position: 151-431
Cow position: chr1:27112934-27112657 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 42, 88

Conread position: 155-431
Cow position: chr1:77105521-77105248 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 207
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 38, 147

Conread position: 168-431
Cow position: chr1:102323311-102323061 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 30, 51

Conread position: 243-430
Cow position: chr1:82911236-82911051 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 151
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 133, 163

Conread position: 243-431
Cow position: chr1:18194103-18194289 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 133, 141

Conread position: 251-431
Cow position: chr1:27542733-27542915 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 126, 60

Conread position: 255-428
Cow position: chr1:57696347-57696176 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 261-431
Cow position: chr1:19184710-19184536 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 141
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 95, 151

Conread position: 279-429
Cow position: chr1:38476937-38477085 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 97, 105

Conread position: 289-431
Cow position: chr1:21996376-21996237 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 89, 43

Conread position: 308-431
Cow position: chr1:67287996-67288117 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 69, 0

Show alignments to all cow chromosomes.