Cow genome map


           Conread name:
           rtra01_c16r1.y1
        

               Conread position:
               1-415
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               286
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               190, 56
               

               Conread position:
               1-431
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 53
               

               Conread position:
               1-431
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 13
               

               Conread position:
               1-431
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 73
               

               Conread position:
               1-431
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 128
               

               Conread position:
               1-431
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 105
               

               Conread position:
               11-373
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               227
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               181, 36
               

               Conread position:
               13-429
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 49
               

               Conread position:
               14-319
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               210
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               5, 82
               

               Conread position:
               15-428
               

               Cow position:
               
               

               Alignm length:
               420
               

               Alignm identity:
               263
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               178, 20
               

               Conread position:
               15-431
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 54
               

               Conread position:
               15-431
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 15
               

               Conread position:
               15-431
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 22
               

               Conread position:
               16-431
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 46
               

               Conread position:
               18-431
               

               Cow position:
               
               

               Alignm length:
               439
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 29
               

               Conread position:
               19-398
               

               Cow position:
               
               

               Alignm length:
               396
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 70
               

               Conread position:
               19-431
               

               Cow position:
               
               

               Alignm length:
               422
               

               Alignm identity:
               268
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               20, 78
               

               Conread position:
               20-431
               

               Cow position:
               
               

               Alignm length:
               421
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 26
               

               Conread position:
               36-431
               

               Cow position:
               
               

               Alignm length:
               414
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 22
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 20
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               278
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 20
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               54-431
               

               Cow position:
               
               

               Alignm length:
               392
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 20
               

               Conread position:
               82-431
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 14
               

               Conread position:
               82-431
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 14
               

               Conread position:
               82-431
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 14
               

               Conread position:
               82-431
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 14
               

               Conread position:
               85-431
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 11
               

               Conread position:
               87-318
               

               Cow position:
               
               

               Alignm length:
               243
               

               Alignm identity:
               182
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               69, 9
               

               Conread position:
               87-431
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 48
               

               Conread position:
               90-431
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 298
               

               Conread position:
               92-346
               

               Cow position:
               
               

               Alignm length:
               266
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 87
               

               Conread position:
               96-430
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 293
               

               Conread position:
               100-398
               

               Cow position:
               
               

               Alignm length:
               302
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 59
               

               Conread position:
               106-429
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 12
               

               Conread position:
               106-431
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 12
               

               Conread position:
               109-427
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 281
               

               Conread position:
               110-372
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               69, 49
               

               Conread position:
               110-403
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 175
               

               Conread position:
               110-403
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 90
               

               Conread position:
               110-428
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               222
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               47, 76
               

               Conread position:
               110-430
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 277
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 292
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               47, 65
               

               Conread position:
               111-406
               

               Cow position:
               
               

               Alignm length:
               300
               

               Alignm identity:
               208
               

               Alignm E-value:
               9e-29
               

               Alignm gaps (pig, cow):
               81, 48
               

               Conread position:
               112-282
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               44, 118
               

               Conread position:
               112-429
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 222
               

               Conread position:
               112-429
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 275
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               328
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 121
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 305
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 275
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 294
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 132
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 275
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 275
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 70
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 215
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 49
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 288
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 283
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               333
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 282
               

               Conread position:
               116-261
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               118-374
               

               Cow position:
               
               

               Alignm length:
               265
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 11
               

               Conread position:
               120-429
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 259
               

               Conread position:
               121-353
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               191
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               121-427
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 110
               

               Conread position:
               121-429
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 173
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               323
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 60
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 80
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 38
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               65, 109
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 132
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 269
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 50
               

               Conread position:
               122-431
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 265
               

               Conread position:
               122-431
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 267
               

               Conread position:
               136-351
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 65
               

               Conread position:
               136-431
               

               Cow position:
               
               

               Alignm length:
               307
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 252
               

               Conread position:
               151-431
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 256
               

               Conread position:
               151-431
               

               Cow position:
               
               

               Alignm length:
               286
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               42, 88
               

               Conread position:
               155-431
               

               Cow position:
               
               

               Alignm length:
               283
               

               Alignm identity:
               207
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               38, 147
               

               Conread position:
               168-431
               

               Cow position:
               
               

               Alignm length:
               273
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               30, 51
               

               Conread position:
               243-430
               

               Cow position:
               
               

               Alignm length:
               189
               

               Alignm identity:
               151
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               133, 163
               

               Conread position:
               243-431
               

               Cow position:
               
               

               Alignm length:
               190
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               133, 141
               

               Conread position:
               251-431
               

               Cow position:
               
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               126, 60
               

               Conread position:
               255-428
               

               Cow position:
               
               

               Alignm length:
               174
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               261-431
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               95, 151
               

               Conread position:
               279-429
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               97, 105
               

               Conread position:
               289-431
               

               Cow position:
               
               

               Alignm length:
               144
               

               Alignm identity:
               109
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               89, 43
               

               Conread position:
               308-431
               

               Cow position:
               
               

               Alignm length:
               124
               

               Alignm identity:
               100
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               69, 0
               
Show alignments to all cow chromosomes.