Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-350 |
| Cow position: | chr10:32558727-32559068 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 152, 36 |
| Conread position: | 1-431 |
| Cow position: | chr10:32702110-32702557 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 153 |
| Conread position: | 12-390 |
| Cow position: | chr10:10583495-10583884 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 15-403 |
| Cow position: | chr10:68160260-68159863 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-423 |
| Cow position: | chr10:54930830-54930422 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 15-430 |
| Cow position: | chr10:8291423-8291843 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 58 |
| Conread position: | 15-431 |
| Cow position: | chr10:1378876-1379297 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-431 |
| Cow position: | chr10:14334459-14334045 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 47 |
| Conread position: | 15-431 |
| Cow position: | chr10:22102614-22103033 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 15-431 |
| Cow position: | chr10:29631422-29630994 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 22 |
| Conread position: | 15-431 |
| Cow position: | chr10:29845270-29844857 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 44 |
| Conread position: | 16-431 |
| Cow position: | chr10:22346339-22346760 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 18-431 |
| Cow position: | chr10:37771268-37771685 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 19-431 |
| Cow position: | chr10:30684109-30683690 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 20-431 |
| Cow position: | chr10:39439535-39439953 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 37-431 |
| Cow position: | chr10:2119599-2119210 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr10:21488360-21488757 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr10:57988592-57988194 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 43-431 |
| Cow position: | chr10:38343948-38343565 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 14 |
| Conread position: | 43-431 |
| Cow position: | chr10:38722499-38722901 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 43-431 |
| Cow position: | chr10:62407368-62406981 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 14 |
| Conread position: | 96-236 |
| Cow position: | chr10:50136025-50136170 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 96-398 |
| Cow position: | chr10:38544433-38544123 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 98-305 |
| Cow position: | chr10:5256606-5256388 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 99-431 |
| Cow position: | chr10:20369639-20369312 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 61 |
| Conread position: | 103-428 |
| Cow position: | chr10:46183915-46184243 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 59 |
| Conread position: | 106-248 |
| Cow position: | chr10:36512051-36512197 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 110-326 |
| Cow position: | chr10:53320922-53320705 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 82, 103 |
| Conread position: | 110-402 |
| Cow position: | chr10:28946947-28947235 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 77, 49 |
| Conread position: | 110-405 |
| Cow position: | chr10:58376834-58376538 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 45, 191 |
| Conread position: | 110-430 |
| Cow position: | chr10:10172206-10172535 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-431 |
| Cow position: | chr10:40641426-40641744 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 112-340 |
| Cow position: | chr10:39181269-39181508 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 112-429 |
| Cow position: | chr10:39778648-39778333 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 32 |
| Conread position: | 112-430 |
| Cow position: | chr10:21739282-21738956 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 204 |
| Conread position: | 112-430 |
| Cow position: | chr10:28255943-28255608 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 313 |
| Conread position: | 112-430 |
| Cow position: | chr10:57555862-57555535 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 275 |
| Conread position: | 112-431 |
| Cow position: | chr10:41568574-41568902 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 112-431 |
| Cow position: | chr10:44708138-44707816 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 226 |
| Conread position: | 115-346 |
| Cow position: | chr10:21517501-21517268 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 9, 132 |
| Conread position: | 121-401 |
| Cow position: | chr10:46196540-46196812 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 121-430 |
| Cow position: | chr10:25651947-25651629 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 266 |
| Conread position: | 121-431 |
| Cow position: | chr10:29109504-29109184 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 282 |
| Conread position: | 121-431 |
| Cow position: | chr10:39039816-39039515 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 38 |
| Conread position: | 122-431 |
| Cow position: | chr10:14805329-14805644 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 265 |
| Conread position: | 123-427 |
| Cow position: | chr10:7280626-7280308 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 275 |
| Conread position: | 125-333 |
| Cow position: | chr10:20382544-20382330 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 125-431 |
| Cow position: | chr10:31525223-31525529 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 129-430 |
| Cow position: | chr10:41158903-41159213 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 259 |
| Conread position: | 131-431 |
| Cow position: | chr10:22644493-22644799 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 138 |
| Conread position: | 134-431 |
| Cow position: | chr10:23409748-23409449 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 115 |
| Conread position: | 151-431 |
| Cow position: | chr10:16927184-16927471 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 239 |
| Conread position: | 168-431 |
| Cow position: | chr10:21898594-21898331 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 179-400 |
| Cow position: | chr10:42114075-42114287 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 179-431 |
| Cow position: | chr10:19143066-19142815 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 232-430 |
| Cow position: | chr10:20515032-20515230 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 6, 104 |
Show alignments to all cow chromosomes.