Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-403 |
| Cow position: | chr11:73134313-73134718 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 103 |
| Conread position: | 1-431 |
| Cow position: | chr11:29667583-29667154 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 105 |
| Conread position: | 2-431 |
| Cow position: | chr11:31927155-31927596 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 45 |
| Conread position: | 6-431 |
| Cow position: | chr11:58135401-58135829 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 56 |
| Conread position: | 10-430 |
| Cow position: | chr11:26548541-26548968 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 11-430 |
| Cow position: | chr11:44582328-44581903 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 12-431 |
| Cow position: | chr11:23249457-23249029 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 13-429 |
| Cow position: | chr11:1489154-1488733 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 15-240 |
| Cow position: | chr11:28053626-28053391 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 15-396 |
| Cow position: | chr11:11989149-11989538 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-431 |
| Cow position: | chr11:24394332-24394754 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 40 |
| Conread position: | 19-431 |
| Cow position: | chr11:85392812-85392393 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 52 |
| Conread position: | 23-242 |
| Cow position: | chr11:44156233-44156009 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 133, 14 |
| Conread position: | 37-415 |
| Cow position: | chr11:10848494-10848875 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-427 |
| Cow position: | chr11:72309996-72309603 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr11:23881073-23881462 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr11:41169654-41169252 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 43-431 |
| Cow position: | chr11:19101444-19101049 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 84-400 |
| Cow position: | chr11:50949244-50948914 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 17, 228 |
| Conread position: | 85-431 |
| Cow position: | chr11:4026521-4026171 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 11 |
| Conread position: | 96-374 |
| Cow position: | chr11:4034297-4034012 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 110-296 |
| Cow position: | chr11:25865728-25865537 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 110-338 |
| Cow position: | chr11:52808470-52808701 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 81, 49 |
| Conread position: | 110-389 |
| Cow position: | chr11:26073855-26073568 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 200 |
| Conread position: | 110-430 |
| Cow position: | chr11:17106571-17106242 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-430 |
| Cow position: | chr11:66730197-66730526 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 86 |
| Conread position: | 110-431 |
| Cow position: | chr11:17281369-17281038 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 291 |
| Conread position: | 110-431 |
| Cow position: | chr11:26069935-26069605 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 8 |
| Conread position: | 110-431 |
| Cow position: | chr11:64355925-64356240 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 51 |
| Conread position: | 112-316 |
| Cow position: | chr11:1494921-1494716 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 112-424 |
| Cow position: | chr11:76372888-76372597 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 112-430 |
| Cow position: | chr11:44517751-44517426 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 107 |
| Conread position: | 112-431 |
| Cow position: | chr11:9156038-9155717 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 199 |
| Conread position: | 112-431 |
| Cow position: | chr11:20733125-20732793 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 282 |
| Conread position: | 112-431 |
| Cow position: | chr11:26123814-26123478 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 273 |
| Conread position: | 112-431 |
| Cow position: | chr11:47759167-47758838 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 236 |
| Conread position: | 112-431 |
| Cow position: | chr11:53430918-53430592 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 276 |
| Conread position: | 112-431 |
| Cow position: | chr11:63654221-63653892 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 276 |
| Conread position: | 116-431 |
| Cow position: | chr11:11590087-11590407 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 216 |
| Conread position: | 121-430 |
| Cow position: | chr11:32452950-32453271 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 269 |
| Conread position: | 121-430 |
| Cow position: | chr11:50836546-50836228 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 266 |
| Conread position: | 121-430 |
| Cow position: | chr11:67154802-67155117 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 233 |
| Conread position: | 122-404 |
| Cow position: | chr11:31754925-31754645 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 36, 122 |
| Conread position: | 122-430 |
| Cow position: | chr11:19062954-19062637 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 281 |
| Conread position: | 122-431 |
| Cow position: | chr11:38834325-38834007 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 271 |
| Conread position: | 139-431 |
| Cow position: | chr11:4055186-4054896 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 242 |
| Conread position: | 175-427 |
| Cow position: | chr11:31863269-31863523 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 235 |
| Conread position: | 180-430 |
| Cow position: | chr11:63647251-63647501 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 124, 59 |
| Conread position: | 232-431 |
| Cow position: | chr11:4268936-4268737 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 6, 163 |
| Conread position: | 251-431 |
| Cow position: | chr11:40405790-40405612 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 150 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 125, 155 |
Show alignments to all cow chromosomes.