Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 7-431 |
| Cow position: | chr13:34342981-34343414 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 15-429 |
| Cow position: | chr13:34041251-34040827 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 15-431 |
| Cow position: | chr13:31611225-31610809 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 45 |
| Conread position: | 19-431 |
| Cow position: | chr13:47575169-47575600 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 23 |
| Conread position: | 27-431 |
| Cow position: | chr13:11797594-11797199 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 66 |
| Conread position: | 37-431 |
| Cow position: | chr13:35758395-35758788 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 85-430 |
| Cow position: | chr13:31508064-31508413 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 87-422 |
| Cow position: | chr13:17309618-17309962 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 300 |
| Conread position: | 96-430 |
| Cow position: | chr13:6358288-6358631 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 291 |
| Conread position: | 96-430 |
| Cow position: | chr13:49974830-49975183 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 231 |
| Conread position: | 96-431 |
| Cow position: | chr13:32984180-32983836 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 288 |
| Conread position: | 105-431 |
| Cow position: | chr13:60423928-60424256 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 106-339 |
| Cow position: | chr13:25692848-25693092 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 185 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 106-431 |
| Cow position: | chr13:4942561-4942893 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 106-431 |
| Cow position: | chr13:42090515-42090185 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 110-390 |
| Cow position: | chr13:20541078-20540784 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 110-430 |
| Cow position: | chr13:21697442-21697771 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-431 |
| Cow position: | chr13:11793903-11793570 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 112-403 |
| Cow position: | chr13:60468606-60468910 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 209 |
| Conread position: | 112-430 |
| Cow position: | chr13:33524776-33524449 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 276 |
| Conread position: | 112-430 |
| Cow position: | chr13:42217502-42217175 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 275 |
| Conread position: | 112-431 |
| Cow position: | chr13:3653133-3652800 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 289 |
| Conread position: | 112-431 |
| Cow position: | chr13:5500818-5500491 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 274 |
| Conread position: | 112-431 |
| Cow position: | chr13:13901048-13901373 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 121 |
| Conread position: | 112-431 |
| Cow position: | chr13:16253336-16253009 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 280 |
| Conread position: | 112-431 |
| Cow position: | chr13:31732713-31732387 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 134 |
| Conread position: | 112-431 |
| Cow position: | chr13:32735990-32735684 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 86 |
| Conread position: | 120-430 |
| Cow position: | chr13:50193207-50192891 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 127 |
| Conread position: | 121-362 |
| Cow position: | chr13:31690953-31690719 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 121-374 |
| Cow position: | chr13:2387616-2387352 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 121-431 |
| Cow position: | chr13:6666944-6666631 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 121-431 |
| Cow position: | chr13:9045950-9046256 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 71, 41 |
| Conread position: | 121-431 |
| Cow position: | chr13:33335121-33334813 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 121-431 |
| Cow position: | chr13:43981894-43981577 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 129-431 |
| Cow position: | chr13:34938638-34938946 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 183 |
| Conread position: | 136-389 |
| Cow position: | chr13:34324371-34324109 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 187-431 |
| Cow position: | chr13:9298710-9298954 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 199 |
| Conread position: | 251-431 |
| Cow position: | chr13:19128305-19128128 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 126, 100 |
| Conread position: | 279-431 |
| Cow position: | chr13:53553167-53553020 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 294-430 |
| Cow position: | chr13:15543974-15544109 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 82, 96 |
| Conread position: | 310-431 |
| Cow position: | chr13:20574032-20573911 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 98 |
Show alignments to all cow chromosomes.