Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-398 |
| Cow position: | chr14:25692913-25693299 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 37 |
| Conread position: | 1-429 |
| Cow position: | chr14:12742101-12741665 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 60 |
| Conread position: | 2-431 |
| Cow position: | chr14:18417456-18417887 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 9-386 |
| Cow position: | chr14:13579339-13579706 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 9-429 |
| Cow position: | chr14:44552793-44553212 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 10-431 |
| Cow position: | chr14:5530016-5530441 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 41 |
| Conread position: | 13-267 |
| Cow position: | chr14:50111758-50112025 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 60 |
| Conread position: | 15-415 |
| Cow position: | chr14:43559195-43559605 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 15-431 |
| Cow position: | chr14:11153191-11152769 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 15-431 |
| Cow position: | chr14:17687457-17687879 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 15-431 |
| Cow position: | chr14:19327304-19326879 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 35 |
| Conread position: | 18-261 |
| Cow position: | chr14:44690032-44690280 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 21-415 |
| Cow position: | chr14:12611383-12611777 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 10 |
| Conread position: | 21-431 |
| Cow position: | chr14:47643257-47643670 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 64, 6 |
| Conread position: | 37-430 |
| Cow position: | chr14:13779936-13780334 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr14:16918733-16918338 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr14:17000072-16999668 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr14:20783452-20783851 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 43-431 |
| Cow position: | chr14:29775111-29774739 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 29, 161 |
| Conread position: | 82-430 |
| Cow position: | chr14:22030419-22030067 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 14 |
| Conread position: | 82-431 |
| Cow position: | chr14:15274812-15274458 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 84-431 |
| Cow position: | chr14:191074-191433 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 6 |
| Conread position: | 85-321 |
| Cow position: | chr14:44227406-44227652 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 85-398 |
| Cow position: | chr14:44255728-44255430 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 85-405 |
| Cow position: | chr14:13834169-13834498 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 60, 11 |
| Conread position: | 87-430 |
| Cow position: | chr14:751598-751947 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 97-431 |
| Cow position: | chr14:35930637-35930969 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 62 |
| Conread position: | 100-403 |
| Cow position: | chr14:9046622-9046938 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 106-374 |
| Cow position: | chr14:45207336-45207608 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 106-431 |
| Cow position: | chr14:33678115-33678445 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 110-248 |
| Cow position: | chr14:40342114-40342259 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 110-340 |
| Cow position: | chr14:10147928-10148169 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 110-358 |
| Cow position: | chr14:27990556-27990317 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 110-405 |
| Cow position: | chr14:12124129-12123820 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 110-430 |
| Cow position: | chr14:45670982-45670649 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 110-431 |
| Cow position: | chr14:11476234-11475907 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 304 |
| Conread position: | 110-431 |
| Cow position: | chr14:18105481-18105805 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 82, 131 |
| Conread position: | 110-431 |
| Cow position: | chr14:45710675-45710355 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 91 |
| Conread position: | 112-429 |
| Cow position: | chr14:27978411-27978737 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 275 |
| Conread position: | 112-430 |
| Cow position: | chr14:1659511-1659837 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 274 |
| Conread position: | 112-430 |
| Cow position: | chr14:16808267-16807940 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 269 |
| Conread position: | 112-431 |
| Cow position: | chr14:5513986-5514310 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 138 |
| Conread position: | 112-431 |
| Cow position: | chr14:7473407-7473735 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 283 |
| Conread position: | 112-431 |
| Cow position: | chr14:48826333-48826658 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 278 |
| Conread position: | 120-431 |
| Cow position: | chr14:45027938-45027619 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 31 |
| Conread position: | 121-305 |
| Cow position: | chr14:13274666-13274865 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 121-430 |
| Cow position: | chr14:37454869-37454559 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 121-431 |
| Cow position: | chr14:13863032-13862719 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 264 |
| Conread position: | 121-431 |
| Cow position: | chr14:17759827-17759515 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 120 |
| Conread position: | 121-431 |
| Cow position: | chr14:37225222-37225539 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 47 |
| Conread position: | 121-431 |
| Cow position: | chr14:48253250-48252944 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 252-431 |
| Cow position: | chr14:47656592-47656762 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 125, 104 |
| Conread position: | 261-431 |
| Cow position: | chr14:13462672-13462839 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 115, 99 |
Show alignments to all cow chromosomes.