Cow genome map


           Conread name:
           rtra01_c16r1.y1
        

               Conread position:
               1-398
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 37
               

               Conread position:
               1-429
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 60
               

               Conread position:
               2-431
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 76
               

               Conread position:
               9-386
               

               Cow position:
               
               

               Alignm length:
               393
               

               Alignm identity:
               262
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               5, 29
               

               Conread position:
               9-429
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 26
               

               Conread position:
               10-431
               

               Cow position:
               
               

               Alignm length:
               435
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 41
               

               Conread position:
               13-267
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               185
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               15, 60
               

               Conread position:
               15-415
               

               Cow position:
               
               

               Alignm length:
               419
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 58
               

               Conread position:
               15-431
               

               Cow position:
               
               

               Alignm length:
               428
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               68, 60
               

               Conread position:
               15-431
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 47
               

               Conread position:
               15-431
               

               Cow position:
               
               

               Alignm length:
               432
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 35
               

               Conread position:
               18-261
               

               Cow position:
               
               

               Alignm length:
               253
               

               Alignm identity:
               179
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               24, 56
               

               Conread position:
               21-415
               

               Cow position:
               
               

               Alignm length:
               404
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 10
               

               Conread position:
               21-431
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               276
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               64, 6
               

               Conread position:
               37-430
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               37-431
               

               Cow position:
               
               

               Alignm length:
               408
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               43-431
               

               Cow position:
               
               

               Alignm length:
               398
               

               Alignm identity:
               270
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               29, 161
               

               Conread position:
               82-430
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               111, 14
               

               Conread position:
               82-431
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 14
               

               Conread position:
               84-431
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 6
               

               Conread position:
               85-321
               

               Cow position:
               
               

               Alignm length:
               248
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               74, 11
               

               Conread position:
               85-398
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               21, 11
               

               Conread position:
               85-405
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               216
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               60, 11
               

               Conread position:
               87-430
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 9
               

               Conread position:
               97-431
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 62
               

               Conread position:
               100-403
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               106-374
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               53, 11
               

               Conread position:
               106-431
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 11
               

               Conread position:
               110-248
               

               Cow position:
               
               

               Alignm length:
               146
               

               Alignm identity:
               114
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               110-340
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               186
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               110-358
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               184
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               83, 15
               

               Conread position:
               110-405
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               110-430
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 304
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               218
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               82, 131
               

               Conread position:
               110-431
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 91
               

               Conread position:
               112-429
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 275
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 274
               

               Conread position:
               112-430
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 269
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 138
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 283
               

               Conread position:
               112-431
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 278
               

               Conread position:
               120-431
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 31
               

               Conread position:
               121-305
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               121-430
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               232
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               73, 33
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 264
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               318
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 120
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               320
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 47
               

               Conread position:
               121-431
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               230
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               48, 40
               

               Conread position:
               252-431
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               125, 104
               

               Conread position:
               261-431
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               144
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               115, 99
               
Show alignments to all cow chromosomes.