Cow genome map

Conread name: rtra01_c16r1.y1

Conread position: 1-427
Cow position: chr15:35736753-35737172 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 57

Conread position: 1-431
Cow position: chr15:32712191-32712618 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 91

Conread position: 2-431
Cow position: chr15:2588505-2588066 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 35

Conread position: 7-431
Cow position: chr15:1833686-1833258 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 98

Conread position: 8-431
Cow position: chr15:21450630-21451076 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 299
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 19, 43

Conread position: 10-430
Cow position: chr15:24288516-24288080 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 298
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 46, 27

Conread position: 10-431
Cow position: chr15:6591162-6590734 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 27

Conread position: 15-390
Cow position: chr15:51675673-51676065 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 58

Conread position: 15-430
Cow position: chr15:4386713-4387137 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 46

Conread position: 15-431
Cow position: chr15:2077620-2078030 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 15-431
Cow position: chr15:4766148-4766574 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 58

Conread position: 15-431
Cow position: chr15:51218680-51219105 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 15

Conread position: 19-431
Cow position: chr15:3260361-3259940 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 28

Conread position: 23-402
Cow position: chr15:9003251-9002866 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 256
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 57, 15

Conread position: 26-399
Cow position: chr15:36668680-36669056 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 27

Conread position: 37-430
Cow position: chr15:25654084-25653680 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr15:4923128-4923526 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr15:7838251-7838650 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr15:18577700-18578096 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr15:19737073-19736674 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr15:24296074-24296468 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 20

Conread position: 37-431
Cow position: chr15:51613127-51613518 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 271
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 79, 59

Conread position: 43-411
Cow position: chr15:7261594-7261962 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 14

Conread position: 50-431
Cow position: chr15:35752309-35751924 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 7

Conread position: 82-431
Cow position: chr15:6154902-6154546 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 14

Conread position: 85-431
Cow position: chr15:53339251-53339604 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 11

Conread position: 85-431
Cow position: chr15:53409945-53410288 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 11

Conread position: 87-420
Cow position: chr15:24718355-24718694 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 244
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 13, 76

Conread position: 87-430
Cow position: chr15:107030-107381 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 87-430
Cow position: chr15:41659197-41659548 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 9

Conread position: 106-431
Cow position: chr15:32067558-32067228 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 12

Conread position: 107-427
Cow position: chr15:6114639-6114965 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 234
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 52, 141

Conread position: 110-335
Cow position: chr15:20361038-20360806 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 110-379
Cow position: chr15:6079797-6080075 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 110-381
Cow position: chr15:7892296-7892013 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 110-389
Cow position: chr15:4141683-4141395 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 137

Conread position: 110-397
Cow position: chr15:1830532-1830251 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 49

Conread position: 110-427
Cow position: chr15:7929629-7929946 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 48, 220

Conread position: 110-430
Cow position: chr15:2646598-2646273 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 137

Conread position: 110-431
Cow position: chr15:1767893-1768209 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 19

Conread position: 110-431
Cow position: chr15:4672485-4672814 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 188

Conread position: 110-431
Cow position: chr15:17149175-17149492 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 221
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 62, 85

Conread position: 111-431
Cow position: chr15:18331781-18331452 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 249

Conread position: 112-305
Cow position: chr15:6485633-6485836 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 152
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 47, 0

Conread position: 112-403
Cow position: chr15:2013612-2013917 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 112-429
Cow position: chr15:18266722-18266386 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 43, 149

Conread position: 112-430
Cow position: chr15:7564050-7564378 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 276

Conread position: 112-431
Cow position: chr15:1765376-1765697 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 30

Conread position: 112-431
Cow position: chr15:4726255-4726583 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 283

Conread position: 112-431
Cow position: chr15:5010578-5010251 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 275

Conread position: 112-431
Cow position: chr15:14581307-14580978 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 112-431
Cow position: chr15:20411651-20411977 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 270

Conread position: 112-431
Cow position: chr15:21664685-21664361 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 278

Conread position: 112-431
Cow position: chr15:32492830-32492502 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 281

Conread position: 115-415
Cow position: chr15:329393-329698 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 116

Conread position: 121-389
Cow position: chr15:611231-610945 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 37, 80

Conread position: 121-395
Cow position: chr15:3008780-3008498 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 264

Conread position: 121-402
Cow position: chr15:8751462-8751750 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 33

Conread position: 121-429
Cow position: chr15:6279541-6279853 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 167

Conread position: 121-430
Cow position: chr15:4197529-4197847 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 266

Conread position: 121-430
Cow position: chr15:6561649-6561967 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 266

Conread position: 121-430
Cow position: chr15:35646616-35646303 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 276

Conread position: 121-431
Cow position: chr15:4652435-4652759 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 121-431
Cow position: chr15:4813660-4813971 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 58, 25

Conread position: 121-431
Cow position: chr15:4916236-4916554 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 237
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 38, 92

Conread position: 121-431
Cow position: chr15:32719599-32719299 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 72

Conread position: 122-431
Cow position: chr15:2901198-2900879 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 267

Conread position: 122-431
Cow position: chr15:9912168-9911855 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 139

Conread position: 148-431
Cow position: chr15:3890002-3890285 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 53

Conread position: 150-431
Cow position: chr15:58749-59033 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 207
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 80

Conread position: 151-431
Cow position: chr15:4686824-4687111 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 237

Conread position: 151-431
Cow position: chr15:36624752-36624476 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 131

Conread position: 152-389
Cow position: chr15:32479501-32479255 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 6, 0

Conread position: 162-431
Cow position: chr15:8698820-8698553 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 193
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 26, 47

Conread position: 177-430
Cow position: chr15:368520-368273 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 81

Conread position: 179-431
Cow position: chr15:13390191-13389943 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 11, 0

Conread position: 239-431
Cow position: chr15:31859765-31859575 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 167

Show alignments to all cow chromosomes.