Cow genome map
Conread name: | rtra01_c16r1.y1 |
Conread position: | 1-427 |
Cow position: | chr15:35736753-35737172 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 57 |
Conread position: | 1-431 |
Cow position: | chr15:32712191-32712618 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 91 |
Conread position: | 2-431 |
Cow position: | chr15:2588505-2588066 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 35 |
Conread position: | 7-431 |
Cow position: | chr15:1833686-1833258 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 98 |
Conread position: | 8-431 |
Cow position: | chr15:21450630-21451076 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 299 |
Alignm E-value: | 3e-34 |
Alignm gaps (pig, cow): | 19, 43 |
Conread position: | 10-430 |
Cow position: | chr15:24288516-24288080 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 298 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 46, 27 |
Conread position: | 10-431 |
Cow position: | chr15:6591162-6590734 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 27 |
Conread position: | 15-390 |
Cow position: | chr15:51675673-51676065 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 58 |
Conread position: | 15-430 |
Cow position: | chr15:4386713-4387137 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 46 |
Conread position: | 15-431 |
Cow position: | chr15:2077620-2078030 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 296 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 47 |
Conread position: | 15-431 |
Cow position: | chr15:4766148-4766574 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 58 |
Conread position: | 15-431 |
Cow position: | chr15:51218680-51219105 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 15 |
Conread position: | 19-431 |
Cow position: | chr15:3260361-3259940 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 28 |
Conread position: | 23-402 |
Cow position: | chr15:9003251-9002866 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 256 |
Alignm E-value: | 2e-31 |
Alignm gaps (pig, cow): | 57, 15 |
Conread position: | 26-399 |
Cow position: | chr15:36668680-36669056 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 27 |
Conread position: | 37-430 |
Cow position: | chr15:25654084-25653680 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 21 |
Conread position: | 37-431 |
Cow position: | chr15:4923128-4923526 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 21 |
Conread position: | 37-431 |
Cow position: | chr15:7838251-7838650 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 21 |
Conread position: | 37-431 |
Cow position: | chr15:18577700-18578096 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 289 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 21 |
Conread position: | 37-431 |
Cow position: | chr15:19737073-19736674 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 21 |
Conread position: | 37-431 |
Cow position: | chr15:24296074-24296468 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 20 |
Conread position: | 37-431 |
Cow position: | chr15:51613127-51613518 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 271 |
Alignm E-value: | 6.00036e-42 |
Alignm gaps (pig, cow): | 79, 59 |
Conread position: | 43-411 |
Cow position: | chr15:7261594-7261962 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 117, 14 |
Conread position: | 50-431 |
Cow position: | chr15:35752309-35751924 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 7 |
Conread position: | 82-431 |
Cow position: | chr15:6154902-6154546 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 14 |
Conread position: | 85-431 |
Cow position: | chr15:53339251-53339604 (view UCSC Genome Browser custom track) |
Alignm length: | 357 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 11 |
Conread position: | 85-431 |
Cow position: | chr15:53409945-53410288 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 153, 11 |
Conread position: | 87-420 |
Cow position: | chr15:24718355-24718694 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 244 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 13, 76 |
Conread position: | 87-430 |
Cow position: | chr15:107030-107381 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 9 |
Conread position: | 87-430 |
Cow position: | chr15:41659197-41659548 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 9 |
Conread position: | 106-431 |
Cow position: | chr15:32067558-32067228 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 12 |
Conread position: | 107-427 |
Cow position: | chr15:6114639-6114965 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 234 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 52, 141 |
Conread position: | 110-335 |
Cow position: | chr15:20361038-20360806 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 183 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 110-379 |
Cow position: | chr15:6079797-6080075 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 0 |
Conread position: | 110-381 |
Cow position: | chr15:7892296-7892013 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 220 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 110-389 |
Cow position: | chr15:4141683-4141395 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 137 |
Conread position: | 110-397 |
Cow position: | chr15:1830532-1830251 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 210 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 78, 49 |
Conread position: | 110-427 |
Cow position: | chr15:7929629-7929946 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 225 |
Alignm E-value: | 4e-38 |
Alignm gaps (pig, cow): | 48, 220 |
Conread position: | 110-430 |
Cow position: | chr15:2646598-2646273 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 137 |
Conread position: | 110-431 |
Cow position: | chr15:1767893-1768209 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 82, 19 |
Conread position: | 110-431 |
Cow position: | chr15:4672485-4672814 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 188 |
Conread position: | 110-431 |
Cow position: | chr15:17149175-17149492 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 221 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 62, 85 |
Conread position: | 111-431 |
Cow position: | chr15:18331781-18331452 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 249 |
Conread position: | 112-305 |
Cow position: | chr15:6485633-6485836 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 152 |
Alignm E-value: | 6e-32 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 112-403 |
Cow position: | chr15:2013612-2013917 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 112-429 |
Cow position: | chr15:18266722-18266386 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 241 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 43, 149 |
Conread position: | 112-430 |
Cow position: | chr15:7564050-7564378 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 276 |
Conread position: | 112-431 |
Cow position: | chr15:1765376-1765697 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 30 |
Conread position: | 112-431 |
Cow position: | chr15:4726255-4726583 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 283 |
Conread position: | 112-431 |
Cow position: | chr15:5010578-5010251 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 275 |
Conread position: | 112-431 |
Cow position: | chr15:14581307-14580978 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 112-431 |
Cow position: | chr15:20411651-20411977 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 270 |
Conread position: | 112-431 |
Cow position: | chr15:21664685-21664361 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 278 |
Conread position: | 112-431 |
Cow position: | chr15:32492830-32492502 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 281 |
Conread position: | 115-415 |
Cow position: | chr15:329393-329698 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 229 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 116 |
Conread position: | 121-389 |
Cow position: | chr15:611231-610945 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 210 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 37, 80 |
Conread position: | 121-395 |
Cow position: | chr15:3008780-3008498 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 264 |
Conread position: | 121-402 |
Cow position: | chr15:8751462-8751750 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 33 |
Conread position: | 121-429 |
Cow position: | chr15:6279541-6279853 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 167 |
Conread position: | 121-430 |
Cow position: | chr15:4197529-4197847 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 266 |
Conread position: | 121-430 |
Cow position: | chr15:6561649-6561967 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 266 |
Conread position: | 121-430 |
Cow position: | chr15:35646616-35646303 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 276 |
Conread position: | 121-431 |
Cow position: | chr15:4652435-4652759 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 121-431 |
Cow position: | chr15:4813660-4813971 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 229 |
Alignm E-value: | 6.00036e-42 |
Alignm gaps (pig, cow): | 58, 25 |
Conread position: | 121-431 |
Cow position: | chr15:4916236-4916554 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 237 |
Alignm E-value: | 7.9874e-44 |
Alignm gaps (pig, cow): | 38, 92 |
Conread position: | 121-431 |
Cow position: | chr15:32719599-32719299 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 72 |
Conread position: | 122-431 |
Cow position: | chr15:2901198-2900879 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 267 |
Conread position: | 122-431 |
Cow position: | chr15:9912168-9911855 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 139 |
Conread position: | 148-431 |
Cow position: | chr15:3890002-3890285 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 53 |
Conread position: | 150-431 |
Cow position: | chr15:58749-59033 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 207 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 9, 80 |
Conread position: | 151-431 |
Cow position: | chr15:4686824-4687111 (view UCSC Genome Browser custom track) |
Alignm length: | 290 |
Alignm identity: | 224 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 237 |
Conread position: | 151-431 |
Cow position: | chr15:36624752-36624476 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 131 |
Conread position: | 152-389 |
Cow position: | chr15:32479501-32479255 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 170 |
Alignm E-value: | 4e-28 |
Alignm gaps (pig, cow): | 6, 0 |
Conread position: | 162-431 |
Cow position: | chr15:8698820-8698553 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 193 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 26, 47 |
Conread position: | 177-430 |
Cow position: | chr15:368520-368273 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 199 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 81 |
Conread position: | 179-431 |
Cow position: | chr15:13390191-13389943 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 177 |
Alignm E-value: | 3e-35 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 239-431 |
Cow position: | chr15:31859765-31859575 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 159 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 167 |
Show alignments to all cow chromosomes.