Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-397 |
| Cow position: | chr17:22133444-22133848 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 1-430 |
| Cow position: | chr17:2169610-2170029 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 30, 84 |
| Conread position: | 2-429 |
| Cow position: | chr17:5227793-5228232 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 53 |
| Conread position: | 9-430 |
| Cow position: | chr17:23038754-23039184 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 10-345 |
| Cow position: | chr17:2580803-2581151 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 246 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 9, 70 |
| Conread position: | 13-431 |
| Cow position: | chr17:24028813-24028389 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 7 |
| Conread position: | 15-431 |
| Cow position: | chr17:6069738-6070156 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 18-431 |
| Cow position: | chr17:20086575-20086163 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 29 |
| Conread position: | 37-431 |
| Cow position: | chr17:3640690-3640292 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 82-427 |
| Cow position: | chr17:40806065-40806416 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 8 |
| Conread position: | 82-431 |
| Cow position: | chr17:14240761-14241117 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 85-430 |
| Cow position: | chr17:6261120-6261471 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 85-431 |
| Cow position: | chr17:29302016-29302370 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 96-431 |
| Cow position: | chr17:11086455-11086114 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 66 |
| Conread position: | 106-294 |
| Cow position: | chr17:20230558-20230748 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 106-431 |
| Cow position: | chr17:4083299-4083626 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 106-431 |
| Cow position: | chr17:15326560-15326892 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 110-299 |
| Cow position: | chr17:33284562-33284375 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 45, 84 |
| Conread position: | 110-427 |
| Cow position: | chr17:20403702-20404027 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 263 |
| Conread position: | 110-430 |
| Cow position: | chr17:13967210-13967538 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 202 |
| Conread position: | 110-430 |
| Cow position: | chr17:39049498-39049829 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-431 |
| Cow position: | chr17:21418846-21419167 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 12, 8 |
| Conread position: | 112-430 |
| Cow position: | chr17:2263426-2263751 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 68 |
| Conread position: | 112-430 |
| Cow position: | chr17:9080135-9079809 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 280 |
| Conread position: | 112-431 |
| Cow position: | chr17:182861-183184 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 206 |
| Conread position: | 112-431 |
| Cow position: | chr17:2246796-2246473 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 238 |
| Conread position: | 118-431 |
| Cow position: | chr17:16121288-16120993 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 121-283 |
| Cow position: | chr17:22559259-22559423 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 76 |
| Conread position: | 121-388 |
| Cow position: | chr17:150597-150338 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 253, 33 |
| Conread position: | 121-427 |
| Cow position: | chr17:14936676-14936363 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 121-430 |
| Cow position: | chr17:3654995-3654677 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 266 |
| Conread position: | 121-431 |
| Cow position: | chr17:2077700-2077379 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 34, 287 |
| Conread position: | 121-431 |
| Cow position: | chr17:19267537-19267232 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 121-431 |
| Cow position: | chr17:20489615-20489917 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 77, 12 |
| Conread position: | 121-431 |
| Cow position: | chr17:24783456-24783775 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 254 |
| Conread position: | 121-431 |
| Cow position: | chr17:27793487-27793170 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 264 |
| Conread position: | 121-431 |
| Cow position: | chr17:28027212-28026894 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 295 |
| Conread position: | 122-431 |
| Cow position: | chr17:20080586-20080283 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 185 |
| Conread position: | 133-431 |
| Cow position: | chr17:42266974-42267269 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 151-431 |
| Cow position: | chr17:9751039-9751319 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 87, 21 |
| Conread position: | 186-431 |
| Cow position: | chr17:135998-136241 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 220 |
| Conread position: | 243-430 |
| Cow position: | chr17:19980709-19980524 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 275-431 |
| Cow position: | chr17:22561356-22561509 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 102, 117 |
| Conread position: | 275-431 |
| Cow position: | chr17:34159186-34159339 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 101, 52 |
| Conread position: | 282-430 |
| Cow position: | chr17:33284222-33284080 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 94, 15 |
Show alignments to all cow chromosomes.