Cow genome map

Conread name: rtra01_c16r1.y1

Conread position: 1-431
Cow position:
Alignm length: 442
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 198

Conread position: 1-431
Cow position:
Alignm length: 447
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 96

Conread position: 1-431
Cow position:
Alignm length: 442
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 102

Conread position: 1-431
Cow position:
Alignm length: 445
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 105

Conread position: 1-431
Cow position:
Alignm length: 439
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 45

Conread position: 2-431
Cow position:
Alignm length: 440
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 56

Conread position: 2-431
Cow position:
Alignm length: 458
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 123

Conread position: 7-314
Cow position:
Alignm length: 319
Alignm identity: 215
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 30, 53

Conread position: 9-431
Cow position:
Alignm length: 432
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 77

Conread position: 15-404
Cow position:
Alignm length: 408
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 17

Conread position: 15-430
Cow position:
Alignm length: 431
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 15-431
Cow position:
Alignm length: 431
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 60

Conread position: 15-431
Cow position:
Alignm length: 439
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 58

Conread position: 15-431
Cow position:
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 22

Conread position: 18-429
Cow position:
Alignm length: 426
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 45

Conread position: 18-431
Cow position:
Alignm length: 429
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 44

Conread position: 26-431
Cow position:
Alignm length: 421
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 362

Conread position: 32-431
Cow position:
Alignm length: 411
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 18

Conread position: 37-431
Cow position:
Alignm length: 405
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 20

Conread position: 37-431
Cow position:
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 82-431
Cow position:
Alignm length: 360
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 14

Conread position: 82-431
Cow position:
Alignm length: 360
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 14

Conread position: 84-431
Cow position:
Alignm length: 361
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 310

Conread position: 85-431
Cow position:
Alignm length: 355
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 16

Conread position: 85-431
Cow position:
Alignm length: 360
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 83

Conread position: 87-424
Cow position:
Alignm length: 351
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 290

Conread position: 87-430
Cow position:
Alignm length: 354
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 234

Conread position: 93-431
Cow position:
Alignm length: 348
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 66

Conread position: 96-431
Cow position:
Alignm length: 352
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 24

Conread position: 106-431
Cow position:
Alignm length: 337
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 12

Conread position: 110-248
Cow position:
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 49, 0

Conread position: 110-366
Cow position:
Alignm length: 271
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 110-430
Cow position:
Alignm length: 334
Alignm identity: 236
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 46, 194

Conread position: 110-430
Cow position:
Alignm length: 334
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 49

Conread position: 111-403
Cow position:
Alignm length: 310
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 127

Conread position: 112-271
Cow position:
Alignm length: 171
Alignm identity: 131
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 43, 0

Conread position: 112-430
Cow position:
Alignm length: 337
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 275

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 280

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 275

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 275

Conread position: 112-431
Cow position:
Alignm length: 329
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 218

Conread position: 112-431
Cow position:
Alignm length: 331
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 280

Conread position: 112-431
Cow position:
Alignm length: 338
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 238

Conread position: 112-431
Cow position:
Alignm length: 331
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 235

Conread position: 112-431
Cow position:
Alignm length: 325
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 56

Conread position: 120-431
Cow position:
Alignm length: 329
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 291

Conread position: 121-294
Cow position:
Alignm length: 189
Alignm identity: 150
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 121-318
Cow position:
Alignm length: 206
Alignm identity: 150
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 71, 0

Conread position: 121-389
Cow position:
Alignm length: 283
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 101

Conread position: 121-427
Cow position:
Alignm length: 318
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 266

Conread position: 121-427
Cow position:
Alignm length: 314
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 267

Conread position: 121-431
Cow position:
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 172

Conread position: 121-431
Cow position:
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 278

Conread position: 121-431
Cow position:
Alignm length: 319
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 213

Conread position: 121-431
Cow position:
Alignm length: 323
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 274

Conread position: 122-291
Cow position:
Alignm length: 176
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 33, 120

Conread position: 150-348
Cow position:
Alignm length: 207
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 184

Conread position: 151-286
Cow position:
Alignm length: 144
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 63

Conread position: 155-431
Cow position:
Alignm length: 285
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 160

Conread position: 160-431
Cow position:
Alignm length: 281
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 232

Conread position: 179-431
Cow position:
Alignm length: 260
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 14

Conread position: 231-431
Cow position:
Alignm length: 202
Alignm identity: 159
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 145, 159

Conread position: 251-431
Cow position:
Alignm length: 182
Alignm identity: 146
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 125, 133

Conread position: 255-431
Cow position:
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 79, 0

Conread position: 265-431
Cow position:
Alignm length: 168
Alignm identity: 134
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 111, 125

Conread position: 280-431
Cow position:
Alignm length: 152
Alignm identity: 115
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 97, 0

Show alignments to all cow chromosomes.