Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-431 |
| Cow position: | chr2:6880205-6880627 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 198 |
| Conread position: | 1-431 |
| Cow position: | chr2:13044861-13044439 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 1-431 |
| Cow position: | chr2:34563820-34563404 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 102 |
| Conread position: | 1-431 |
| Cow position: | chr2:43445799-43446229 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 1-431 |
| Cow position: | chr2:44934140-44933723 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 45 |
| Conread position: | 2-431 |
| Cow position: | chr2:24926253-24926683 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 2-431 |
| Cow position: | chr2:53330617-53331072 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 123 |
| Conread position: | 7-314 |
| Cow position: | chr2:25743381-25743692 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 30, 53 |
| Conread position: | 9-431 |
| Cow position: | chr2:54693785-54694206 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 15-404 |
| Cow position: | chr2:24471785-24471386 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 15-430 |
| Cow position: | chr2:10264562-10264143 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 15-431 |
| Cow position: | chr2:36981234-36981658 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 15-431 |
| Cow position: | chr2:42669862-42669433 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 15-431 |
| Cow position: | chr2:52063609-52064028 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 18-429 |
| Cow position: | chr2:5903490-5903076 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 45 |
| Conread position: | 18-431 |
| Cow position: | chr2:10185380-10184957 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 26-431 |
| Cow position: | chr2:780557-780138 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 362 |
| Conread position: | 32-431 |
| Cow position: | chr2:32065170-32064769 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 37-431 |
| Cow position: | chr2:281813-281417 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 20 |
| Conread position: | 37-431 |
| Cow position: | chr2:24925439-24925834 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 82-431 |
| Cow position: | chr2:11158207-11157852 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 82-431 |
| Cow position: | chr2:16901169-16901524 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 84-431 |
| Cow position: | chr2:81258089-81258445 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 310 |
| Conread position: | 85-431 |
| Cow position: | chr2:32656560-32656903 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 85-431 |
| Cow position: | chr2:47811764-47812119 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 83 |
| Conread position: | 87-424 |
| Cow position: | chr2:3323651-3323303 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 290 |
| Conread position: | 87-430 |
| Cow position: | chr2:8119460-8119810 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 234 |
| Conread position: | 93-431 |
| Cow position: | chr2:16074613-16074271 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 66 |
| Conread position: | 96-431 |
| Cow position: | chr2:36052099-36051757 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 24 |
| Conread position: | 106-431 |
| Cow position: | chr2:25887612-25887280 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 110-248 |
| Cow position: | chr2:41154757-41154905 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 110-366 |
| Cow position: | chr2:51618199-51618469 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 110-430 |
| Cow position: | chr2:26904817-26904505 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 194 |
| Conread position: | 110-430 |
| Cow position: | chr2:32458120-32457792 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 49 |
| Conread position: | 111-403 |
| Cow position: | chr2:12363046-12362738 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 127 |
| Conread position: | 112-271 |
| Cow position: | chr2:17424800-17424970 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 112-430 |
| Cow position: | chr2:9908855-9909191 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 112-430 |
| Cow position: | chr2:9958132-9957805 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 275 |
| Conread position: | 112-430 |
| Cow position: | chr2:10610704-10610377 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 280 |
| Conread position: | 112-430 |
| Cow position: | chr2:39422566-39422891 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 275 |
| Conread position: | 112-430 |
| Cow position: | chr2:47037492-47037164 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 275 |
| Conread position: | 112-431 |
| Cow position: | chr2:6005904-6005580 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 218 |
| Conread position: | 112-431 |
| Cow position: | chr2:12223336-12223009 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 280 |
| Conread position: | 112-431 |
| Cow position: | chr2:34052099-34052431 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 238 |
| Conread position: | 112-431 |
| Cow position: | chr2:41687709-41688036 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 235 |
| Conread position: | 112-431 |
| Cow position: | chr2:50982199-50981879 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 56 |
| Conread position: | 120-431 |
| Cow position: | chr2:15575903-15575578 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 291 |
| Conread position: | 121-294 |
| Cow position: | chr2:44990355-44990167 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 121-318 |
| Cow position: | chr2:33794919-33794714 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 121-389 |
| Cow position: | chr2:16291634-16291914 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 101 |
| Conread position: | 121-427 |
| Cow position: | chr2:26922377-26922692 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 266 |
| Conread position: | 121-427 |
| Cow position: | chr2:45938746-45938437 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 267 |
| Conread position: | 121-431 |
| Cow position: | chr2:14823995-14824304 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 172 |
| Conread position: | 121-431 |
| Cow position: | chr2:28648658-28648340 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 278 |
| Conread position: | 121-431 |
| Cow position: | chr2:55483203-55482892 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 213 |
| Conread position: | 121-431 |
| Cow position: | chr2:80291813-80291494 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 274 |
| Conread position: | 122-291 |
| Cow position: | chr2:63291030-63290856 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 120 |
| Conread position: | 150-348 |
| Cow position: | chr2:51397989-51397784 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 184 |
| Conread position: | 151-286 |
| Cow position: | chr2:31300125-31300267 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 63 |
| Conread position: | 155-431 |
| Cow position: | chr2:42361281-42361001 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 160 |
| Conread position: | 160-431 |
| Cow position: | chr2:32639936-32640213 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 232 |
| Conread position: | 179-431 |
| Cow position: | chr2:12479248-12478992 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 231-431 |
| Cow position: | chr2:210971-210772 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 145, 159 |
| Conread position: | 251-431 |
| Cow position: | chr2:53005156-53004978 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 125, 133 |
| Conread position: | 255-431 |
| Cow position: | chr2:31454557-31454732 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 265-431 |
| Cow position: | chr2:25022005-25022171 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 111, 125 |
| Conread position: | 280-431 |
| Cow position: | chr2:67188728-67188875 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 97, 0 |
Show alignments to all cow chromosomes.