Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-431 |
| Cow position: | chr21:28613806-28614212 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 46 |
| Conread position: | 1-431 |
| Cow position: | chr21:30597997-30597571 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 59 |
| Conread position: | 2-431 |
| Cow position: | chr21:40270207-40269773 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 7-317 |
| Cow position: | chr21:21520089-21520390 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 7-431 |
| Cow position: | chr21:5018606-5019041 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 54 |
| Conread position: | 9-431 |
| Cow position: | chr21:9893456-9893867 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 89 |
| Conread position: | 15-427 |
| Cow position: | chr21:30563148-30563559 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 15-430 |
| Cow position: | chr21:1286739-1286303 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 15-431 |
| Cow position: | chr21:10568178-10568597 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-431 |
| Cow position: | chr21:31514840-31514418 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 16-431 |
| Cow position: | chr21:2417688-2418103 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 62 |
| Conread position: | 18-429 |
| Cow position: | chr21:147404-147817 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 18-431 |
| Cow position: | chr21:47942425-47942846 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 31-431 |
| Cow position: | chr21:997341-996938 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 37-430 |
| Cow position: | chr21:39426571-39426962 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 275 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 7, 36 |
| Conread position: | 37-431 |
| Cow position: | chr21:33253683-33254080 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr21:47646834-47647231 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 82-380 |
| Cow position: | chr21:5839644-5839353 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 82-431 |
| Cow position: | chr21:27069418-27069065 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 14 |
| Conread position: | 82-431 |
| Cow position: | chr21:27285011-27285353 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 14 |
| Conread position: | 85-431 |
| Cow position: | chr21:36979365-36979003 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 87-430 |
| Cow position: | chr21:6414477-6414126 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 96-431 |
| Cow position: | chr21:2512404-2512748 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 146 |
| Conread position: | 96-431 |
| Cow position: | chr21:34655390-34655729 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 66 |
| Conread position: | 101-431 |
| Cow position: | chr21:2712478-2712795 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 152 |
| Conread position: | 106-431 |
| Cow position: | chr21:361231-361571 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 110-305 |
| Cow position: | chr21:34822641-34822435 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 110-430 |
| Cow position: | chr21:33710718-33711047 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-430 |
| Cow position: | chr21:38802006-38802335 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-431 |
| Cow position: | chr21:468468-468798 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 240 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 49, 186 |
| Conread position: | 110-431 |
| Cow position: | chr21:31250581-31250892 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 90 |
| Conread position: | 112-267 |
| Cow position: | chr21:35145323-35145481 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 112-285 |
| Cow position: | chr21:12054446-12054262 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 112-429 |
| Cow position: | chr21:26635586-26635260 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 263 |
| Conread position: | 112-430 |
| Cow position: | chr21:11507185-11507512 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 281 |
| Conread position: | 112-430 |
| Cow position: | chr21:19612331-19612658 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 275 |
| Conread position: | 112-431 |
| Cow position: | chr21:3780345-3780673 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 121 |
| Conread position: | 117-428 |
| Cow position: | chr21:20743052-20742744 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 121, 69 |
| Conread position: | 117-431 |
| Cow position: | chr21:13298171-13298490 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 228 |
| Conread position: | 121-285 |
| Cow position: | chr21:45783052-45783225 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 121-427 |
| Cow position: | chr21:4588423-4588120 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 116 |
| Conread position: | 121-431 |
| Cow position: | chr21:26849438-26849132 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 54 |
| Conread position: | 122-431 |
| Cow position: | chr21:6626110-6626431 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 285 |
| Conread position: | 123-431 |
| Cow position: | chr21:37372817-37373125 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 74 |
| Conread position: | 132-356 |
| Cow position: | chr21:2673091-2672869 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 106, 66 |
| Conread position: | 151-431 |
| Cow position: | chr21:30654-30927 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 221 |
| Conread position: | 151-431 |
| Cow position: | chr21:26649085-26648815 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 168-431 |
| Cow position: | chr21:44764319-44764055 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 74 |
| Conread position: | 251-431 |
| Cow position: | chr21:1194168-1194335 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 125, 42 |
Show alignments to all cow chromosomes.