Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-368 |
| Cow position: | chr22:12730411-12730027 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 65 |
| Conread position: | 1-403 |
| Cow position: | chr22:8737030-8736647 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 18 |
| Conread position: | 7-431 |
| Cow position: | chr22:522098-521663 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 8-429 |
| Cow position: | chr22:44518340-44517914 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 27 |
| Conread position: | 8-430 |
| Cow position: | chr22:41474392-41473979 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 136, 60 |
| Conread position: | 15-431 |
| Cow position: | chr22:13773824-13774242 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 68 |
| Conread position: | 15-431 |
| Cow position: | chr22:21035087-21034667 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 15-431 |
| Cow position: | chr22:34169643-34170062 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-431 |
| Cow position: | chr22:44397737-44398157 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 44 |
| Conread position: | 24-431 |
| Cow position: | chr22:37292355-37291949 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 11 |
| Conread position: | 29-430 |
| Cow position: | chr22:46614626-46615029 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 8 |
| Conread position: | 37-431 |
| Cow position: | chr22:39468185-39467788 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 42-431 |
| Cow position: | chr22:6333048-6333438 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 15 |
| Conread position: | 43-431 |
| Cow position: | chr22:44935304-44935690 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 14 |
| Conread position: | 82-431 |
| Cow position: | chr22:296816-297178 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 297 |
| Conread position: | 82-431 |
| Cow position: | chr22:1281363-1281007 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 14 |
| Conread position: | 82-431 |
| Cow position: | chr22:36860177-36859821 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 83-431 |
| Cow position: | chr22:10908465-10908109 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 304 |
| Conread position: | 100-431 |
| Cow position: | chr22:30677326-30676986 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 288 |
| Conread position: | 106-431 |
| Cow position: | chr22:16202309-16202640 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 108-430 |
| Cow position: | chr22:23752309-23751984 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 110-322 |
| Cow position: | chr22:44478143-44478363 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 110-405 |
| Cow position: | chr22:3305200-3304899 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 114 |
| Conread position: | 110-430 |
| Cow position: | chr22:11807343-11807021 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 227 |
| Conread position: | 110-431 |
| Cow position: | chr22:1268355-1268025 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 101 |
| Conread position: | 110-431 |
| Cow position: | chr22:13766764-13767091 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 38 |
| Conread position: | 110-431 |
| Cow position: | chr22:15352271-15352598 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 238 |
| Conread position: | 110-431 |
| Cow position: | chr22:38960504-38960835 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 111-431 |
| Cow position: | chr22:29011874-29011547 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 279 |
| Conread position: | 112-271 |
| Cow position: | chr22:44366706-44366537 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 31 |
| Conread position: | 112-325 |
| Cow position: | chr22:24951957-24952181 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 112-415 |
| Cow position: | chr22:37268567-37268877 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 45, 252 |
| Conread position: | 112-430 |
| Cow position: | chr22:3276957-3276630 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 276 |
| Conread position: | 112-430 |
| Cow position: | chr22:11803651-11803326 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 112-430 |
| Cow position: | chr22:27308378-27308051 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 263 |
| Conread position: | 112-430 |
| Cow position: | chr22:35670265-35669944 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 198 |
| Conread position: | 112-431 |
| Cow position: | chr22:15310540-15310230 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 49, 136 |
| Conread position: | 112-431 |
| Cow position: | chr22:46585164-46584841 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 117-430 |
| Cow position: | chr22:30128988-30129305 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 267 |
| Conread position: | 117-430 |
| Cow position: | chr22:30146637-30146954 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 267 |
| Conread position: | 121-429 |
| Cow position: | chr22:1323565-1323876 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 119 |
| Conread position: | 121-430 |
| Cow position: | chr22:1880213-1880531 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 267 |
| Conread position: | 121-431 |
| Cow position: | chr22:1519614-1519305 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 121-431 |
| Cow position: | chr22:15852832-15853149 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 284 |
| Conread position: | 121-431 |
| Cow position: | chr22:31333639-31333321 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 273 |
| Conread position: | 151-431 |
| Cow position: | chr22:34601035-34601314 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 86 |
| Conread position: | 153-431 |
| Cow position: | chr22:29037116-29037389 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 178 |
| Conread position: | 226-431 |
| Cow position: | chr22:28783637-28783841 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 12, 92 |
| Conread position: | 229-431 |
| Cow position: | chr22:34609210-34609418 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 107, 7 |
| Conread position: | 231-428 |
| Cow position: | chr22:9273900-9274091 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 251-431 |
| Cow position: | chr22:44459202-44459384 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 255-431 |
| Cow position: | chr22:48274785-48274617 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.