Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-431 |
| Cow position: | chr24:6353531-6353948 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 6-431 |
| Cow position: | chr24:6323975-6323537 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 45 |
| Conread position: | 8-431 |
| Cow position: | chr24:12238665-12239103 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 15-288 |
| Cow position: | chr24:14389144-14388872 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 140, 22 |
| Conread position: | 15-387 |
| Cow position: | chr24:8606206-8606593 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 15-431 |
| Cow position: | chr24:9545444-9545869 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 15-431 |
| Cow position: | chr24:16560925-16560497 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 22 |
| Conread position: | 15-431 |
| Cow position: | chr24:35869179-35868776 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 67 |
| Conread position: | 15-431 |
| Cow position: | chr24:38585729-38585322 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 51-430 |
| Cow position: | chr24:12334301-12333926 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 18 |
| Conread position: | 82-430 |
| Cow position: | chr24:19834861-19835219 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 82-431 |
| Cow position: | chr24:147155-146796 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 82-431 |
| Cow position: | chr24:14755455-14755812 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 85-362 |
| Cow position: | chr24:17322151-17322437 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 275 |
| Conread position: | 87-403 |
| Cow position: | chr24:44018970-44019297 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 100-431 |
| Cow position: | chr24:38639000-38639342 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 64 |
| Conread position: | 106-431 |
| Cow position: | chr24:9090572-9090247 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 106 |
| Conread position: | 106-431 |
| Cow position: | chr24:22972544-22972878 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 107-374 |
| Cow position: | chr24:5991743-5991467 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 110-389 |
| Cow position: | chr24:310351-310642 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 110-428 |
| Cow position: | chr24:5776915-5776591 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 82, 116 |
| Conread position: | 111-431 |
| Cow position: | chr24:36558066-36557757 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 112-315 |
| Cow position: | chr24:16083295-16083080 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 112-321 |
| Cow position: | chr24:6435969-6436189 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 112-430 |
| Cow position: | chr24:6023602-6023276 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 282 |
| Conread position: | 112-431 |
| Cow position: | chr24:4414057-4413742 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 116-431 |
| Cow position: | chr24:14383138-14382816 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 64 |
| Conread position: | 121-289 |
| Cow position: | chr24:12699329-12699150 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 121-302 |
| Cow position: | chr24:6142567-6142756 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 121-404 |
| Cow position: | chr24:6337879-6338171 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 8 |
| Conread position: | 121-430 |
| Cow position: | chr24:13044133-13043815 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 266 |
| Conread position: | 121-431 |
| Cow position: | chr24:17409962-17410272 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 121, 40 |
| Conread position: | 121-431 |
| Cow position: | chr24:29188785-29189099 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 122-303 |
| Cow position: | chr24:11151741-11151549 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 122-426 |
| Cow position: | chr24:6036485-6036797 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 195 |
| Conread position: | 151-425 |
| Cow position: | chr24:19469072-19468801 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 64 |
| Conread position: | 154-431 |
| Cow position: | chr24:20286382-20286099 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 231 |
| Conread position: | 229-431 |
| Cow position: | chr24:40468781-40468986 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 9, 159 |
| Conread position: | 239-431 |
| Cow position: | chr24:23094401-23094210 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 137, 168 |
| Conread position: | 243-431 |
| Cow position: | chr24:25438229-25438415 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 134, 163 |
| Conread position: | 285-431 |
| Cow position: | chr24:23097093-23096950 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 91, 24 |
Show alignments to all cow chromosomes.