Cow genome map

Conread name: rtra01_c16r1.y1

Conread position: 1-431
Cow position:
Alignm length: 442
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 105

Conread position: 6-431
Cow position:
Alignm length: 446
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 45

Conread position: 8-431
Cow position:
Alignm length: 446
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 26

Conread position: 15-288
Cow position:
Alignm length: 278
Alignm identity: 187
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 140, 22

Conread position: 15-387
Cow position:
Alignm length: 392
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 15

Conread position: 15-431
Cow position:
Alignm length: 432
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 60

Conread position: 15-431
Cow position:
Alignm length: 439
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 15-431
Cow position:
Alignm length: 421
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 67

Conread position: 15-431
Cow position:
Alignm length: 423
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 63

Conread position: 51-430
Cow position:
Alignm length: 392
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 18

Conread position: 82-430
Cow position:
Alignm length: 363
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 14

Conread position: 82-431
Cow position:
Alignm length: 362
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 14

Conread position: 82-431
Cow position:
Alignm length: 362
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 14

Conread position: 85-362
Cow position:
Alignm length: 288
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 275

Conread position: 87-403
Cow position:
Alignm length: 329
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 100-431
Cow position:
Alignm length: 346
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 64

Conread position: 106-431
Cow position:
Alignm length: 333
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 106

Conread position: 106-431
Cow position:
Alignm length: 338
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 12

Conread position: 107-374
Cow position:
Alignm length: 279
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 11

Conread position: 110-389
Cow position:
Alignm length: 292
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 110-428
Cow position:
Alignm length: 330
Alignm identity: 221
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 82, 116

Conread position: 111-431
Cow position:
Alignm length: 326
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 90

Conread position: 112-315
Cow position:
Alignm length: 216
Alignm identity: 163
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 43, 0

Conread position: 112-321
Cow position:
Alignm length: 221
Alignm identity: 169
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 47, 0

Conread position: 112-430
Cow position:
Alignm length: 330
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 282

Conread position: 112-431
Cow position:
Alignm length: 329
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 47

Conread position: 116-431
Cow position:
Alignm length: 327
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 64

Conread position: 121-289
Cow position:
Alignm length: 180
Alignm identity: 140
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 121-302
Cow position:
Alignm length: 190
Alignm identity: 150
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 35, 0

Conread position: 121-404
Cow position:
Alignm length: 295
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 8

Conread position: 121-430
Cow position:
Alignm length: 321
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 266

Conread position: 121-431
Cow position:
Alignm length: 317
Alignm identity: 220
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 121, 40

Conread position: 121-431
Cow position:
Alignm length: 320
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 38

Conread position: 122-303
Cow position:
Alignm length: 193
Alignm identity: 151
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 37, 0

Conread position: 122-426
Cow position:
Alignm length: 317
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 195

Conread position: 151-425
Cow position:
Alignm length: 278
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 64

Conread position: 154-431
Cow position:
Alignm length: 286
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 231

Conread position: 229-431
Cow position:
Alignm length: 208
Alignm identity: 163
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 9, 159

Conread position: 239-431
Cow position:
Alignm length: 194
Alignm identity: 152
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 137, 168

Conread position: 243-431
Cow position:
Alignm length: 190
Alignm identity: 154
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 134, 163

Conread position: 285-431
Cow position:
Alignm length: 148
Alignm identity: 111
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 91, 24

Show alignments to all cow chromosomes.