Cow genome map
Conread name: | rtra01_c16r1.y1 |
Conread position: | 5-431 |
Cow position: | chr28:8719600-8719188 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 42 |
Conread position: | 7-431 |
Cow position: | chr28:17665967-17665554 (view UCSC Genome Browser custom track) |
Alignm length: | 442 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 55 |
Conread position: | 9-431 |
Cow position: | chr28:1386060-1385636 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 33 |
Conread position: | 15-430 |
Cow position: | chr28:12151679-12152098 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 300 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 22 |
Conread position: | 15-431 |
Cow position: | chr28:784011-784429 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 60 |
Conread position: | 15-431 |
Cow position: | chr28:1166541-1166120 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 60 |
Conread position: | 15-431 |
Cow position: | chr28:1216482-1216064 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 54 |
Conread position: | 15-431 |
Cow position: | chr28:3190904-3190479 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 320 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 47 |
Conread position: | 15-431 |
Cow position: | chr28:22259802-22259382 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 306 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 22 |
Conread position: | 15-431 |
Cow position: | chr28:33253658-33254076 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 297 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 26, 45 |
Conread position: | 15-431 |
Cow position: | chr28:33637890-33638319 (view UCSC Genome Browser custom track) |
Alignm length: | 435 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 43 |
Conread position: | 18-406 |
Cow position: | chr28:5803380-5803767 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 29 |
Conread position: | 19-431 |
Cow position: | chr28:15034763-15034338 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 82 |
Conread position: | 19-431 |
Cow position: | chr28:32791033-32790626 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 16 |
Conread position: | 21-348 |
Cow position: | chr28:18146383-18146054 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 221 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 17, 27 |
Conread position: | 29-431 |
Cow position: | chr28:7741799-7742206 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 8 |
Conread position: | 37-431 |
Cow position: | chr28:2085839-2086238 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 298 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 21 |
Conread position: | 37-431 |
Cow position: | chr28:5938862-5939261 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 21 |
Conread position: | 37-431 |
Cow position: | chr28:17389776-17390176 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 21 |
Conread position: | 42-431 |
Cow position: | chr28:34595612-34596005 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 15 |
Conread position: | 82-430 |
Cow position: | chr28:8380453-8380809 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 14 |
Conread position: | 84-431 |
Cow position: | chr28:14194134-14193800 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 239 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 201, 77 |
Conread position: | 87-430 |
Cow position: | chr28:484172-483822 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 9 |
Conread position: | 100-326 |
Cow position: | chr28:9180050-9180279 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 171 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 56, 97 |
Conread position: | 106-387 |
Cow position: | chr28:18100054-18099767 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 207 |
Alignm E-value: | 3e-38 |
Alignm gaps (pig, cow): | 51, 12 |
Conread position: | 106-430 |
Cow position: | chr28:14703944-14703611 (view UCSC Genome Browser custom track) |
Alignm length: | 337 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 287 |
Conread position: | 106-431 |
Cow position: | chr28:1813488-1813161 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 12 |
Conread position: | 106-431 |
Cow position: | chr28:5766172-5766504 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 12 |
Conread position: | 110-430 |
Cow position: | chr28:1459538-1459867 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 277 |
Conread position: | 110-430 |
Cow position: | chr28:6537367-6537038 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 277 |
Conread position: | 110-431 |
Cow position: | chr28:5814676-5814978 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 241 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 49, 74 |
Conread position: | 112-343 |
Cow position: | chr28:10471110-10471356 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 185 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 86, 47 |
Conread position: | 112-431 |
Cow position: | chr28:12408780-12408450 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 112-431 |
Cow position: | chr28:29821444-29821761 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 126 |
Conread position: | 120-401 |
Cow position: | chr28:11489422-11489134 (view UCSC Genome Browser custom track) |
Alignm length: | 294 |
Alignm identity: | 195 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 36, 125 |
Conread position: | 121-406 |
Cow position: | chr28:21566912-21567190 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 206 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 117, 38 |
Conread position: | 121-427 |
Cow position: | chr28:7003452-7003769 (view UCSC Genome Browser custom track) |
Alignm length: | 319 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 237 |
Conread position: | 121-429 |
Cow position: | chr28:13461425-13461739 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 236 |
Conread position: | 121-429 |
Cow position: | chr28:21360951-21361262 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 38, 262 |
Conread position: | 121-430 |
Cow position: | chr28:7827444-7827750 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 94 |
Conread position: | 121-431 |
Cow position: | chr28:5750249-5749930 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 285 |
Conread position: | 121-431 |
Cow position: | chr28:17381417-17381099 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 274 |
Conread position: | 121-431 |
Cow position: | chr28:24590311-24590629 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 35, 228 |
Conread position: | 126-431 |
Cow position: | chr28:24669061-24669370 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 155 |
Conread position: | 134-431 |
Cow position: | chr28:11504766-11504468 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 61 |
Conread position: | 151-431 |
Cow position: | chr28:10645945-10645665 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 212 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 66 |
Conread position: | 160-431 |
Cow position: | chr28:23023728-23023992 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 199 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 85, 79 |
Conread position: | 212-430 |
Cow position: | chr28:31591113-31591331 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 168 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 26, 179 |
Conread position: | 225-431 |
Cow position: | chr28:34202086-34201880 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 152 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 25, 14 |
Conread position: | 303-431 |
Cow position: | chr28:3019063-3018934 (view UCSC Genome Browser custom track) |
Alignm length: | 130 |
Alignm identity: | 99 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.