Cow genome map

Conread name: rtra01_c16r1.y1

Conread position: 5-431
Cow position: chr28:8719600-8719188 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 42

Conread position: 7-431
Cow position: chr28:17665967-17665554 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 55

Conread position: 9-431
Cow position: chr28:1386060-1385636 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 33

Conread position: 15-430
Cow position: chr28:12151679-12152098 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 15-431
Cow position: chr28:784011-784429 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 60

Conread position: 15-431
Cow position: chr28:1166541-1166120 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 60

Conread position: 15-431
Cow position: chr28:1216482-1216064 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 54

Conread position: 15-431
Cow position: chr28:3190904-3190479 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 15-431
Cow position: chr28:22259802-22259382 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 22

Conread position: 15-431
Cow position: chr28:33253658-33254076 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 297
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 26, 45

Conread position: 15-431
Cow position: chr28:33637890-33638319 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 43

Conread position: 18-406
Cow position: chr28:5803380-5803767 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 29

Conread position: 19-431
Cow position: chr28:15034763-15034338 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 82

Conread position: 19-431
Cow position: chr28:32791033-32790626 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 16

Conread position: 21-348
Cow position: chr28:18146383-18146054 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 221
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 17, 27

Conread position: 29-431
Cow position: chr28:7741799-7742206 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 8

Conread position: 37-431
Cow position: chr28:2085839-2086238 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr28:5938862-5939261 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 37-431
Cow position: chr28:17389776-17390176 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 42-431
Cow position: chr28:34595612-34596005 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 15

Conread position: 82-430
Cow position: chr28:8380453-8380809 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 14

Conread position: 84-431
Cow position: chr28:14194134-14193800 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 239
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 201, 77

Conread position: 87-430
Cow position: chr28:484172-483822 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 9

Conread position: 100-326
Cow position: chr28:9180050-9180279 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 56, 97

Conread position: 106-387
Cow position: chr28:18100054-18099767 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 207
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 51, 12

Conread position: 106-430
Cow position: chr28:14703944-14703611 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 287

Conread position: 106-431
Cow position: chr28:1813488-1813161 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 12

Conread position: 106-431
Cow position: chr28:5766172-5766504 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 12

Conread position: 110-430
Cow position: chr28:1459538-1459867 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 277

Conread position: 110-430
Cow position: chr28:6537367-6537038 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 277

Conread position: 110-431
Cow position: chr28:5814676-5814978 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 49, 74

Conread position: 112-343
Cow position: chr28:10471110-10471356 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 185
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 86, 47

Conread position: 112-431
Cow position: chr28:12408780-12408450 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 0

Conread position: 112-431
Cow position: chr28:29821444-29821761 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 126

Conread position: 120-401
Cow position: chr28:11489422-11489134 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 195
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 36, 125

Conread position: 121-406
Cow position: chr28:21566912-21567190 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 117, 38

Conread position: 121-427
Cow position: chr28:7003452-7003769 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 237

Conread position: 121-429
Cow position: chr28:13461425-13461739 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 236

Conread position: 121-429
Cow position: chr28:21360951-21361262 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 262

Conread position: 121-430
Cow position: chr28:7827444-7827750 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 94

Conread position: 121-431
Cow position: chr28:5750249-5749930 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 285

Conread position: 121-431
Cow position: chr28:17381417-17381099 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 274

Conread position: 121-431
Cow position: chr28:24590311-24590629 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 228

Conread position: 126-431
Cow position: chr28:24669061-24669370 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 155

Conread position: 134-431
Cow position: chr28:11504766-11504468 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 61

Conread position: 151-431
Cow position: chr28:10645945-10645665 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 66

Conread position: 160-431
Cow position: chr28:23023728-23023992 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 85, 79

Conread position: 212-430
Cow position: chr28:31591113-31591331 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 26, 179

Conread position: 225-431
Cow position: chr28:34202086-34201880 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 25, 14

Conread position: 303-431
Cow position: chr28:3019063-3018934 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 75, 0

Show alignments to all cow chromosomes.