Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-431 |
| Cow position: | chr29:20252479-20252909 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 99 |
| Conread position: | 1-431 |
| Cow position: | chr29:25931207-25930781 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 96 |
| Conread position: | 1-431 |
| Cow position: | chr29:36635066-36634647 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 46 |
| Conread position: | 1-431 |
| Cow position: | chr29:45205831-45206267 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 67 |
| Conread position: | 2-431 |
| Cow position: | chr29:19654923-19655355 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 6-431 |
| Cow position: | chr29:2840039-2839603 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 24 |
| Conread position: | 7-372 |
| Cow position: | chr29:14112858-14113222 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 50 |
| Conread position: | 7-431 |
| Cow position: | chr29:39078407-39077974 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 30 |
| Conread position: | 15-430 |
| Cow position: | chr29:26163522-26163097 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 15-431 |
| Cow position: | chr29:2691475-2691899 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 15-431 |
| Cow position: | chr29:6264688-6264262 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 82 |
| Conread position: | 15-431 |
| Cow position: | chr29:32287559-32287983 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 26-431 |
| Cow position: | chr29:42803725-42804128 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 10 |
| Conread position: | 34-431 |
| Cow position: | chr29:5958914-5959312 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 23 |
| Conread position: | 37-428 |
| Cow position: | chr29:409910-409528 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr29:5236359-5236761 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr29:16345552-16345949 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr29:19621939-19621530 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 42-431 |
| Cow position: | chr29:2101180-2101575 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 43-431 |
| Cow position: | chr29:16172750-16172371 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 57 |
| Conread position: | 82-431 |
| Cow position: | chr29:7429744-7429383 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 82-431 |
| Cow position: | chr29:9641409-9641048 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 314 |
| Conread position: | 82-431 |
| Cow position: | chr29:14210168-14209815 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 33 |
| Conread position: | 82-431 |
| Cow position: | chr29:34798431-34798075 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 82-431 |
| Cow position: | chr29:45461127-45461483 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 85-430 |
| Cow position: | chr29:19526903-19526550 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 90-431 |
| Cow position: | chr29:47069-46724 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 70 |
| Conread position: | 110-325 |
| Cow position: | chr29:29502852-29502626 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 110-390 |
| Cow position: | chr29:19954033-19954321 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 45, 94 |
| Conread position: | 110-430 |
| Cow position: | chr29:10022925-10022596 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-430 |
| Cow position: | chr29:21431444-21431116 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 110-430 |
| Cow position: | chr29:27180346-27180017 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-430 |
| Cow position: | chr29:27979513-27979185 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 176 |
| Conread position: | 110-430 |
| Cow position: | chr29:38207257-38206928 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 212 |
| Conread position: | 110-431 |
| Cow position: | chr29:647221-647544 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 206 |
| Conread position: | 110-431 |
| Cow position: | chr29:5981301-5980979 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 45, 134 |
| Conread position: | 110-431 |
| Cow position: | chr29:13851466-13851141 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 249 |
| Conread position: | 111-363 |
| Cow position: | chr29:27262309-27262041 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 112-387 |
| Cow position: | chr29:14587328-14587615 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 112-431 |
| Cow position: | chr29:23977532-23977860 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 281 |
| Conread position: | 116-406 |
| Cow position: | chr29:2747045-2746748 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 117-359 |
| Cow position: | chr29:14084714-14084463 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 121-271 |
| Cow position: | chr29:18855527-18855366 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 121-430 |
| Cow position: | chr29:609230-608912 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 267 |
| Conread position: | 121-430 |
| Cow position: | chr29:31182826-31183138 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 256 |
| Conread position: | 121-430 |
| Cow position: | chr29:32541515-32541830 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 265 |
| Conread position: | 121-431 |
| Cow position: | chr29:13018116-13018427 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 124 |
| Conread position: | 121-431 |
| Cow position: | chr29:13583499-13583818 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 267 |
| Conread position: | 121-431 |
| Cow position: | chr29:19889005-19889320 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 265 |
| Conread position: | 121-431 |
| Cow position: | chr29:40501584-40501270 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 121-431 |
| Cow position: | chr29:43324937-43325253 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 122-431 |
| Cow position: | chr29:3176019-3175718 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 39, 53 |
| Conread position: | 130-430 |
| Cow position: | chr29:801160-800851 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 85 |
| Conread position: | 156-431 |
| Cow position: | chr29:27812554-27812820 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 246-431 |
| Cow position: | chr29:10645856-10645674 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 130, 110 |
Show alignments to all cow chromosomes.