Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-430 |
| Cow position: | chr3:20382263-20382687 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 1-430 |
| Cow position: | chr3:46017280-46017693 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 303 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 131, 58 |
| Conread position: | 2-431 |
| Cow position: | chr3:69932621-69932181 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 102 |
| Conread position: | 6-431 |
| Cow position: | chr3:595356-595779 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 9-403 |
| Cow position: | chr3:22853283-22852893 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 128 |
| Conread position: | 10-431 |
| Cow position: | chr3:40824610-40825045 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 70 |
| Conread position: | 15-236 |
| Cow position: | chr3:38867545-38867775 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 61 |
| Conread position: | 15-430 |
| Cow position: | chr3:7247766-7248184 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 15-430 |
| Cow position: | chr3:18860645-18861073 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 15-430 |
| Cow position: | chr3:63241014-63240592 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 15-431 |
| Cow position: | chr3:30315777-30316200 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 15-431 |
| Cow position: | chr3:36877424-36877007 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 46 |
| Conread position: | 15-431 |
| Cow position: | chr3:64016138-64015730 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 302 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 21-302 |
| Cow position: | chr3:3058047-3058339 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 25-431 |
| Cow position: | chr3:21181452-21181045 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 6 |
| Conread position: | 37-431 |
| Cow position: | chr3:5993826-5993435 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 37-431 |
| Cow position: | chr3:18812752-18813153 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr3:72631320-72631709 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 44-431 |
| Cow position: | chr3:7478656-7478262 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 50-403 |
| Cow position: | chr3:42448384-42448743 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 7 |
| Conread position: | 76-431 |
| Cow position: | chr3:67769112-67769460 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 74, 44 |
| Conread position: | 82-380 |
| Cow position: | chr3:5884827-5885133 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 14 |
| Conread position: | 82-431 |
| Cow position: | chr3:48058065-48057708 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 82-431 |
| Cow position: | chr3:49136269-49135912 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 84-431 |
| Cow position: | chr3:6687086-6687440 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 164 |
| Conread position: | 85-431 |
| Cow position: | chr3:34029621-34029267 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 11 |
| Conread position: | 92-350 |
| Cow position: | chr3:63002254-63001988 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 96-360 |
| Cow position: | chr3:27919736-27920011 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 96-430 |
| Cow position: | chr3:19799863-19799527 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 300 |
| Conread position: | 99-431 |
| Cow position: | chr3:38494553-38494892 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 56, 166 |
| Conread position: | 99-431 |
| Cow position: | chr3:47087608-47087930 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 77 |
| Conread position: | 100-429 |
| Cow position: | chr3:30617607-30617273 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 186 |
| Conread position: | 101-431 |
| Cow position: | chr3:19755637-19755311 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 17 |
| Conread position: | 106-430 |
| Cow position: | chr3:56327429-56327759 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 106-431 |
| Cow position: | chr3:3840196-3839865 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 106-431 |
| Cow position: | chr3:23206552-23206223 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 110-289 |
| Cow position: | chr3:48843579-48843769 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 110-374 |
| Cow position: | chr3:34090160-34089891 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 256 |
| Conread position: | 110-426 |
| Cow position: | chr3:51364463-51364141 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 110-430 |
| Cow position: | chr3:1742654-1742983 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 277 |
| Conread position: | 110-430 |
| Cow position: | chr3:2918792-2919116 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 164 |
| Conread position: | 110-430 |
| Cow position: | chr3:3524338-3524663 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 110-430 |
| Cow position: | chr3:4287412-4287738 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 137 |
| Conread position: | 110-431 |
| Cow position: | chr3:27864500-27864825 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 271 |
| Conread position: | 110-431 |
| Cow position: | chr3:65208506-65208828 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 112-347 |
| Cow position: | chr3:51938774-51938533 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 112-404 |
| Cow position: | chr3:2854121-2853823 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 192 |
| Conread position: | 112-422 |
| Cow position: | chr3:18462508-18462202 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 47 |
| Conread position: | 112-430 |
| Cow position: | chr3:16224210-16224537 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 281 |
| Conread position: | 112-430 |
| Cow position: | chr3:19879969-19880296 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 276 |
| Conread position: | 112-430 |
| Cow position: | chr3:45034064-45034391 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 277 |
| Conread position: | 112-430 |
| Cow position: | chr3:64026810-64026486 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 182 |
| Conread position: | 112-431 |
| Cow position: | chr3:6783692-6784021 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 276 |
| Conread position: | 112-431 |
| Cow position: | chr3:32621717-32621389 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 161 |
| Conread position: | 112-431 |
| Cow position: | chr3:44925387-44925715 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 281 |
| Conread position: | 112-431 |
| Cow position: | chr3:56146628-56146957 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 282 |
| Conread position: | 112-431 |
| Cow position: | chr3:57483398-57483073 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 278 |
| Conread position: | 112-431 |
| Cow position: | chr3:66889642-66889315 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 116-431 |
| Cow position: | chr3:32200350-32200669 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 121-427 |
| Cow position: | chr3:50916678-50916986 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 39, 198 |
| Conread position: | 121-429 |
| Cow position: | chr3:15054367-15054054 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 38 |
| Conread position: | 121-431 |
| Cow position: | chr3:31416350-31416669 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 266 |
| Conread position: | 122-431 |
| Cow position: | chr3:37970381-37970699 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 265 |
| Conread position: | 124-431 |
| Cow position: | chr3:19945581-19945903 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 268 |
| Conread position: | 141-350 |
| Cow position: | chr3:72671186-72670967 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 151-431 |
| Cow position: | chr3:53516976-53517262 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 241 |
| Conread position: | 200-431 |
| Cow position: | chr3:56338851-56338618 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 195 |
| Conread position: | 219-431 |
| Cow position: | chr3:19940371-19940582 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 19, 117 |
| Conread position: | 251-431 |
| Cow position: | chr3:10242128-10242306 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 125, 133 |
| Conread position: | 257-431 |
| Cow position: | chr3:38868068-38868244 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 143 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 119, 0 |
Show alignments to all cow chromosomes.