Cow genome map
| Conread name: | rtra01_c16r1.y1 |
| Conread position: | 1-431 |
| Cow position: | chr4:16060302-16060735 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 49 |
| Conread position: | 2-431 |
| Cow position: | chr4:50975650-50976073 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 284 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 54, 67 |
| Conread position: | 7-431 |
| Cow position: | chr4:16639639-16640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 40 |
| Conread position: | 7-431 |
| Cow position: | chr4:33494578-33495011 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 15-431 |
| Cow position: | chr4:1049226-1048808 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 15-431 |
| Cow position: | chr4:10882585-10883005 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 15-431 |
| Cow position: | chr4:42405644-42406071 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 15-431 |
| Cow position: | chr4:44780188-44779765 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 15-431 |
| Cow position: | chr4:57985023-57985447 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 54 |
| Conread position: | 15-431 |
| Cow position: | chr4:67682228-67682654 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 37-403 |
| Cow position: | chr4:12588389-12588758 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-429 |
| Cow position: | chr4:25598428-25598032 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 37-431 |
| Cow position: | chr4:43318577-43318180 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 20 |
| Conread position: | 43-428 |
| Cow position: | chr4:3356875-3356481 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 55 |
| Conread position: | 50-431 |
| Cow position: | chr4:13494401-13494788 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 7 |
| Conread position: | 82-396 |
| Cow position: | chr4:12240121-12239800 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 14 |
| Conread position: | 85-430 |
| Cow position: | chr4:20236295-20235942 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 11 |
| Conread position: | 85-430 |
| Cow position: | chr4:38930492-38930839 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 103, 11 |
| Conread position: | 87-430 |
| Cow position: | chr4:17502227-17501876 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 9 |
| Conread position: | 87-430 |
| Cow position: | chr4:41955868-41956218 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 6 |
| Conread position: | 88-430 |
| Cow position: | chr4:28653388-28653040 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 150 |
| Conread position: | 104-387 |
| Cow position: | chr4:64216551-64216274 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 106-313 |
| Cow position: | chr4:69521649-69521858 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 49, 21 |
| Conread position: | 106-390 |
| Cow position: | chr4:9847084-9846791 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 110-299 |
| Cow position: | chr4:45106592-45106792 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 110-324 |
| Cow position: | chr4:27300389-27300165 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 41, 183 |
| Conread position: | 110-390 |
| Cow position: | chr4:20067597-20067309 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 49 |
| Conread position: | 110-399 |
| Cow position: | chr4:14755545-14755244 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 110-415 |
| Cow position: | chr4:604756-605070 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 290 |
| Conread position: | 110-430 |
| Cow position: | chr4:14386947-14387277 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 278 |
| Conread position: | 110-431 |
| Cow position: | chr4:28832846-28833170 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 112 |
| Conread position: | 112-430 |
| Cow position: | chr4:160287-160612 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 267 |
| Conread position: | 112-430 |
| Cow position: | chr4:5443697-5443370 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 206 |
| Conread position: | 112-430 |
| Cow position: | chr4:17092734-17092409 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 215 |
| Conread position: | 112-430 |
| Cow position: | chr4:18423388-18423067 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 112-430 |
| Cow position: | chr4:41960028-41960354 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 206 |
| Conread position: | 112-430 |
| Cow position: | chr4:43882238-43882560 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 278 |
| Conread position: | 112-431 |
| Cow position: | chr4:99090-98757 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 238 |
| Conread position: | 121-391 |
| Cow position: | chr4:34178102-34177831 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 199 |
| Conread position: | 121-403 |
| Cow position: | chr4:14819762-14819474 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 34, 125 |
| Conread position: | 121-430 |
| Cow position: | chr4:5881296-5881610 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 68 |
| Conread position: | 121-430 |
| Cow position: | chr4:9355519-9355834 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 263 |
| Conread position: | 121-430 |
| Cow position: | chr4:30472350-30472668 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 267 |
| Conread position: | 121-430 |
| Cow position: | chr4:33022499-33022184 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 265 |
| Conread position: | 121-430 |
| Cow position: | chr4:65665257-65664957 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 182 |
| Conread position: | 121-431 |
| Cow position: | chr4:8702706-8703009 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 121-431 |
| Cow position: | chr4:26876644-26876332 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 121-431 |
| Cow position: | chr4:27335068-27335395 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 289 |
| Conread position: | 121-431 |
| Cow position: | chr4:33071697-33071383 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 159 |
| Conread position: | 121-431 |
| Cow position: | chr4:44726715-44727034 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 267 |
| Conread position: | 122-431 |
| Cow position: | chr4:6567517-6567835 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 265 |
| Conread position: | 212-430 |
| Cow position: | chr4:6267954-6267736 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 167 |
| Conread position: | 215-430 |
| Cow position: | chr4:20241759-20241975 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 24, 177 |
| Conread position: | 251-431 |
| Cow position: | chr4:68837720-68837541 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 50, 141 |
| Conread position: | 261-431 |
| Cow position: | chr4:43898254-43898082 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 115, 0 |
Show alignments to all cow chromosomes.